Best Alignments for T0335

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1t95A/T0335-1t95A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t95A/T0335-1t95A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.5874e-013.42e-13 a.5.8.1
d.235.1.2
d.58.11.3
1t3wA/T0335-1t3wA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t3wA/T0335-1t3wA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7306e+009.94e-04
1xhdA/T0335-1xhdA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xhdA/T0335-1xhdA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7614e+005.28e-06
1avsA/T0335-1avsA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1avsA/T0335-1avsA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8950e+002.21e-08 1cll a.39.1.5
1wdtA/T0335-1wdtA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wdtA/T0335-1wdtA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9453e+002.64e-05
2au5A/T0335-2au5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2au5A/T0335-2au5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9981e+005.76e-07
2beqD/T0335-2beqD-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2beqD/T0335-2beqD-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.8055e+005.41e-05
1a7w/T0335-1a7w-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1a7w/T0335-1a7w-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.9995e+008.79e-09 1a7w a.22.1.2
1f46A/T0335-1f46A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1f46A/T0335-1f46A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3858e+001.39e-05 1f46A d.129.4.1
1lj9A/T0335-1lj9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1lj9A/T0335-1lj9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.7288e+002.05e-05 a.4.5.28

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001