Best Alignments for T0335

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1t95A/T0335-1t95A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t95A/T0335-1t95A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.3300e-017.74e-13 a.5.8.1
d.235.1.2
d.58.11.3
1ap4/T0335-1ap4-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ap4/T0335-1ap4-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.7963e-011.93e-07 1ncx a.39.1.5
1avsA/T0335-1avsA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1avsA/T0335-1avsA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3325e+006.79e-08 1cll a.39.1.5
1f47B/T0335-1f47B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1f47B/T0335-1f47B-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4932e+005.98e-06 1f46A d.129.4.1
1xhdA/T0335-1xhdA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xhdA/T0335-1xhdA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2106e+005.28e-06
1wdtA/T0335-1wdtA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wdtA/T0335-1wdtA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4782e+004.15e-05
1pvyA/T0335-1pvyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pvyA/T0335-1pvyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1649e+001.08e-08 d.115.1.2
1ockA/T0335-1ockA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ockA/T0335-1ockA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4018e+006.62e-06 c.117.1.1
2amyA/T0335-2amyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2amyA/T0335-2amyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.5733e+009.10e-07
1gzqA/T0335-1gzqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gzqA/T0335-1gzqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.7597e+006.04e-04 b.1.1.2
d.19.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001