# TARGET T0335 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0335.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 54 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.015 0.006 0.002 0.019 0.174 0.785 2 I 0.043 0.060 0.002 0.048 0.098 0.749 3 S 0.021 0.011 0.002 0.119 0.065 0.782 4 N 0.001 0.001 0.004 0.953 0.011 0.031 5 A 0.001 0.001 0.004 0.967 0.014 0.013 6 K 0.001 0.001 0.004 0.979 0.010 0.006 7 I 0.001 0.001 0.002 0.990 0.004 0.004 8 A 0.001 0.001 0.001 0.986 0.008 0.005 9 R 0.001 0.001 0.001 0.989 0.004 0.005 10 I 0.001 0.001 0.001 0.994 0.002 0.004 11 N 0.001 0.001 0.001 0.996 0.001 0.002 12 E 0.001 0.001 0.001 0.994 0.002 0.003 13 L 0.001 0.001 0.001 0.989 0.005 0.005 14 A 0.001 0.001 0.001 0.984 0.006 0.010 15 A 0.001 0.001 0.001 0.968 0.010 0.020 16 K 0.001 0.001 0.002 0.955 0.022 0.019 17 A 0.001 0.001 0.004 0.919 0.046 0.030 18 K 0.001 0.003 0.010 0.767 0.131 0.088 19 A 0.001 0.003 0.019 0.687 0.213 0.078 20 G 0.001 0.002 0.031 0.527 0.286 0.153 21 V 0.001 0.003 0.015 0.192 0.230 0.559 22 I 0.001 0.007 0.005 0.082 0.175 0.730 23 T 0.001 0.003 0.002 0.079 0.084 0.831 24 E 0.001 0.001 0.005 0.943 0.021 0.030 25 E 0.001 0.001 0.006 0.955 0.026 0.012 26 E 0.001 0.001 0.003 0.970 0.018 0.008 27 K 0.001 0.001 0.002 0.980 0.012 0.006 28 A 0.001 0.001 0.001 0.974 0.014 0.010 29 E 0.001 0.001 0.001 0.970 0.012 0.017 30 Q 0.001 0.001 0.001 0.985 0.004 0.010 31 Q 0.001 0.001 0.001 0.982 0.007 0.011 32 K 0.001 0.001 0.001 0.988 0.004 0.007 33 L 0.001 0.001 0.002 0.973 0.010 0.015 34 R 0.001 0.001 0.001 0.987 0.005 0.006 35 Q 0.001 0.001 0.001 0.982 0.007 0.009 36 E 0.001 0.001 0.001 0.986 0.005 0.008 37 Y 0.001 0.001 0.002 0.980 0.006 0.012 38 L 0.001 0.001 0.001 0.991 0.003 0.004 39 K 0.001 0.001 0.001 0.991 0.004 0.004 40 G 0.001 0.001 0.001 0.991 0.004 0.004 41 F 0.001 0.001 0.001 0.993 0.002 0.004 42 R 0.001 0.001 0.001 0.995 0.002 0.002 43 S 0.001 0.001 0.001 0.993 0.003 0.003 44 S 0.001 0.001 0.002 0.992 0.003 0.003 45 M 0.001 0.001 0.002 0.994 0.002 0.002 46 K 0.001 0.001 0.005 0.987 0.005 0.002 47 N 0.001 0.001 0.013 0.964 0.016 0.006 48 T 0.004 0.001 0.022 0.910 0.043 0.019 49 L 0.020 0.009 0.071 0.721 0.151 0.028 50 K 0.030 0.005 0.087 0.351 0.387 0.139 51 S 0.062 0.001 0.055 0.115 0.442 0.325 52 V 0.500 0.016 0.012 0.021 0.178 0.273 53 K 0.768 0.014 0.001 0.004 0.038 0.174 54 I 0.892 0.006 0.001 0.002 0.019 0.079 55 I 0.880 0.047 0.001 0.001 0.014 0.058 56 D 0.339 0.049 0.003 0.006 0.568 0.035 57 P 0.013 0.001 0.005 0.007 0.961 0.014 58 E 0.005 0.001 0.002 0.002 0.980 0.011 59 G 0.012 0.017 0.001 0.002 0.946 0.022 60 N 0.147 0.033 0.001 0.007 0.169 0.643 61 D 0.266 0.262 0.003 0.009 0.082 0.379 62 V 0.099 0.139 0.002 0.021 0.117 0.621 63 T 0.012 0.009 0.001 0.036 0.048 0.894 64 P 0.001 0.001 0.011 0.975 0.005 0.007 65 E 0.001 0.001 0.010 0.982 0.006 0.002 66 K 0.001 0.001 0.006 0.990 0.003 0.001 67 L 0.001 0.001 0.001 0.996 0.001 0.001 68 K 0.001 0.001 0.001 0.999 0.001 0.001 69 R 0.001 0.001 0.001 0.998 0.001 0.001 70 E 0.001 0.001 0.001 0.996 0.003 0.001 71 Q 0.001 0.001 0.001 0.991 0.006 0.002 72 R 0.001 0.001 0.002 0.979 0.014 0.005 73 N 0.001 0.001 0.003 0.936 0.040 0.020 74 N 0.001 0.001 0.004 0.860 0.057 0.078 75 K 0.001 0.003 0.010 0.346 0.132 0.508 76 L 0.001 0.005 0.014 0.177 0.171 0.633 77 H 0.001 0.001 0.003 0.034 0.065 0.898