# TARGET T0335 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str2-from-empty.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0335.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 54 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.005 0.802 0.001 0.006 0.085 0.001 0.001 0.003 0.063 0.016 0.012 0.008 2 I 0.001 0.028 0.799 0.001 0.005 0.111 0.001 0.001 0.005 0.023 0.013 0.002 0.014 3 S 0.001 0.012 0.307 0.001 0.007 0.532 0.001 0.001 0.003 0.110 0.022 0.002 0.005 4 N 0.001 0.001 0.010 0.001 0.008 0.961 0.001 0.001 0.001 0.007 0.013 0.001 0.001 5 A 0.001 0.001 0.011 0.001 0.006 0.972 0.001 0.001 0.001 0.004 0.007 0.001 0.001 6 K 0.001 0.001 0.003 0.001 0.002 0.989 0.001 0.001 0.001 0.001 0.003 0.001 0.001 7 I 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.001 0.001 0.001 8 A 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.003 0.001 0.001 9 R 0.001 0.001 0.001 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.008 0.001 0.001 10 I 0.001 0.001 0.003 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.004 0.001 0.001 11 N 0.001 0.001 0.003 0.001 0.001 0.987 0.001 0.001 0.001 0.003 0.005 0.001 0.001 12 E 0.001 0.001 0.002 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.007 0.001 0.001 13 L 0.001 0.001 0.001 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.008 0.001 0.001 14 A 0.001 0.001 0.003 0.001 0.001 0.984 0.001 0.001 0.001 0.001 0.010 0.001 0.001 15 A 0.001 0.001 0.002 0.001 0.001 0.976 0.001 0.001 0.001 0.002 0.017 0.001 0.001 16 K 0.001 0.001 0.005 0.001 0.002 0.974 0.001 0.001 0.001 0.004 0.014 0.001 0.001 17 A 0.001 0.001 0.004 0.001 0.004 0.957 0.001 0.001 0.001 0.004 0.029 0.001 0.001 18 K 0.001 0.002 0.029 0.001 0.022 0.844 0.001 0.001 0.001 0.016 0.084 0.001 0.001 19 A 0.001 0.005 0.047 0.001 0.041 0.698 0.001 0.001 0.001 0.041 0.163 0.001 0.003 20 G 0.001 0.002 0.097 0.001 0.018 0.352 0.001 0.001 0.001 0.283 0.241 0.002 0.003 21 V 0.001 0.006 0.287 0.001 0.008 0.096 0.001 0.001 0.001 0.190 0.407 0.002 0.003 22 I 0.001 0.007 0.928 0.001 0.001 0.009 0.001 0.001 0.001 0.047 0.007 0.001 0.002 23 T 0.001 0.002 0.984 0.001 0.001 0.003 0.001 0.001 0.001 0.009 0.001 0.001 0.001 24 E 0.001 0.001 0.024 0.001 0.025 0.891 0.001 0.001 0.001 0.017 0.043 0.001 0.001 25 E 0.001 0.001 0.024 0.001 0.020 0.913 0.001 0.001 0.001 0.010 0.032 0.001 0.001 26 E 0.001 0.001 0.016 0.001 0.015 0.957 0.001 0.001 0.001 0.005 0.007 0.001 0.001 27 K 0.001 0.001 0.015 0.001 0.005 0.966 0.001 0.001 0.001 0.005 0.008 0.001 0.001 28 A 0.001 0.001 0.010 0.001 0.006 0.963 0.001 0.001 0.001 0.003 0.016 0.001 0.001 29 E 0.001 0.001 0.006 0.001 0.003 0.976 0.001 0.001 0.001 0.002 0.012 0.001 0.001 30 Q 0.001 0.001 0.010 0.001 0.001 0.979 0.001 0.001 0.001 0.005 0.004 0.001 0.001 31 Q 0.001 0.001 0.002 0.001 0.001 0.990 0.001 0.001 0.001 0.003 0.003 0.001 0.001 32 K 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 33 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 34 R 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 35 Q 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 36 E 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.004 0.001 0.001 37 Y 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.006 0.001 0.001 38 L 0.001 0.001 0.004 0.001 0.001 0.984 0.001 0.001 0.001 0.001 0.010 0.001 0.001 39 K 0.001 0.001 0.002 0.001 0.001 0.974 0.001 0.001 0.001 0.004 0.019 0.001 0.001 40 G 0.001 0.001 0.005 0.001 0.001 0.937 0.001 0.001 0.001 0.006 0.050 0.001 0.001 41 F 0.001 0.001 0.019 0.001 0.002 0.933 0.001 0.001 0.001 0.013 0.032 0.001 0.001 42 R 0.001 0.001 0.013 0.001 0.005 0.961 0.001 0.001 0.001 0.003 0.018 0.001 0.001 43 S 0.001 0.001 0.003 0.001 0.006 0.955 0.001 0.001 0.001 0.006 0.031 0.001 0.001 44 S 0.001 0.001 0.004 0.001 0.003 0.945 0.001 0.001 0.001 0.004 0.044 0.001 0.001 45 M 0.001 0.001 0.010 0.001 0.003 0.964 0.001 0.001 0.001 0.007 0.014 0.001 0.001 46 K 0.001 0.001 0.015 0.001 0.012 0.943 0.001 0.001 0.001 0.005 0.023 0.001 0.001 47 N 0.001 0.001 0.011 0.001 0.037 0.864 0.001 0.001 0.001 0.010 0.074 0.001 0.001 48 T 0.001 0.003 0.026 0.001 0.065 0.764 0.001 0.001 0.001 0.022 0.111 0.001 0.003 49 L 0.001 0.009 0.064 0.001 0.083 0.602 0.001 0.003 0.004 0.051 0.170 0.002 0.011 50 K 0.001 0.004 0.060 0.021 0.081 0.134 0.001 0.001 0.002 0.118 0.565 0.009 0.004 51 S 0.001 0.002 0.125 0.029 0.050 0.026 0.001 0.001 0.009 0.131 0.609 0.003 0.015 52 V 0.004 0.003 0.617 0.014 0.007 0.006 0.001 0.001 0.014 0.215 0.034 0.037 0.047 53 K 0.027 0.015 0.341 0.011 0.002 0.002 0.030 0.003 0.119 0.025 0.004 0.161 0.259 54 I 0.105 0.020 0.098 0.003 0.002 0.002 0.089 0.025 0.122 0.007 0.001 0.223 0.302 55 I 0.168 0.119 0.098 0.034 0.001 0.003 0.106 0.022 0.091 0.008 0.002 0.084 0.264 56 D 0.007 0.018 0.533 0.001 0.002 0.002 0.006 0.001 0.050 0.026 0.006 0.047 0.302 57 P 0.001 0.001 0.010 0.002 0.015 0.009 0.001 0.001 0.001 0.055 0.907 0.001 0.001 58 E 0.001 0.001 0.010 0.001 0.020 0.005 0.001 0.001 0.001 0.085 0.878 0.001 0.001 59 G 0.001 0.004 0.147 0.001 0.039 0.007 0.001 0.001 0.001 0.512 0.279 0.003 0.007 60 N 0.001 0.021 0.462 0.003 0.020 0.005 0.001 0.001 0.003 0.168 0.296 0.004 0.015 61 D 0.013 0.212 0.344 0.005 0.010 0.004 0.005 0.001 0.008 0.143 0.032 0.023 0.200 62 V 0.006 0.156 0.467 0.003 0.010 0.010 0.002 0.001 0.004 0.184 0.017 0.077 0.063 63 T 0.001 0.020 0.494 0.001 0.003 0.066 0.001 0.001 0.002 0.351 0.010 0.004 0.048 64 P 0.001 0.001 0.018 0.001 0.033 0.912 0.001 0.001 0.001 0.014 0.022 0.001 0.001 65 E 0.001 0.001 0.004 0.001 0.022 0.953 0.001 0.001 0.001 0.005 0.015 0.001 0.001 66 K 0.001 0.001 0.002 0.001 0.012 0.976 0.001 0.001 0.001 0.001 0.009 0.001 0.001 67 L 0.001 0.001 0.004 0.001 0.002 0.991 0.001 0.001 0.001 0.001 0.002 0.001 0.001 68 K 0.001 0.001 0.004 0.001 0.001 0.988 0.001 0.001 0.001 0.002 0.004 0.001 0.001 69 R 0.001 0.001 0.001 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.005 0.001 0.001 70 E 0.001 0.001 0.002 0.001 0.002 0.988 0.001 0.001 0.001 0.002 0.004 0.001 0.001 71 Q 0.001 0.001 0.004 0.001 0.007 0.979 0.001 0.001 0.001 0.002 0.007 0.001 0.001 72 R 0.001 0.001 0.006 0.001 0.014 0.936 0.001 0.001 0.001 0.003 0.040 0.001 0.001 73 N 0.001 0.001 0.007 0.001 0.009 0.899 0.001 0.001 0.001 0.019 0.064 0.001 0.001 74 N 0.001 0.001 0.035 0.001 0.004 0.544 0.001 0.001 0.001 0.081 0.334 0.001 0.001 75 K 0.001 0.004 0.251 0.001 0.003 0.108 0.001 0.001 0.001 0.140 0.492 0.001 0.001 76 L 0.001 0.004 0.970 0.001 0.001 0.004 0.001 0.001 0.001 0.011 0.008 0.001 0.001 77 H 0.001 0.002 0.993 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001