a2m2html output for tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- T0335
- gi|38605576|sp|Q834Q9|Y1580_ENTFA_1:77 UPF0291 protein EF_1580 [Taxonomy]
- gi|29343606|gb|AAO81367.1| conserved hypothetical protein [Enterococcus faecalis V583]
- gi|29376143|ref|NP_815297.1| hypothetical protein EF1580 [Enterococcus faecalis V583]
- gi|38605543|sp|O31818|YNZC_BACSU_1:77 Hypothetical UPF0291 protein ynzC [Taxonomy]
- gi|2634172|emb|CAB13672.1| ynzC [Bacillus subtilis subsp. subtilis str. 168]
- gi|16078851|ref|NP_389671.1| hypothetical protein BSU17880 [Bacillus subtilis subsp. subtilis str. 168]
- gi|15458972|gb|AAL00131.1|_4:76 Conserved hypothetical protein [Streptococcus pneumoniae R6]
- gi|14972963|gb|AAK75567.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4]
- gi|15903370|ref|NP_358920.1| hypothetical protein spr1327 [Streptococcus pneumoniae R6]
- gi|15901323|ref|NP_345927.1| hypothetical protein SP1473 [Streptococcus pneumoniae TIGR4]
- gi|38605613|sp|Q97PW7|Y1473_STRPN UPF0291 protein SP1473 [Taxonomy]
- gi|38605585|sp|Q8DP67|Y1327_STRR6 Hypothetical UPF0291 protein spr1327 [Taxonomy]
- gi|52003621|gb|AAU23563.1|_1:77 conserved protein YnzC [Bacillus licheniformis ATCC 14580]
- gi|52348291|gb|AAU40925.1| YnzC [Bacillus licheniformis DSM 13]
- gi|52080410|ref|YP_079201.1| conserved protein YnzC [Bacillus licheniformis ATCC 14580]
- gi|62287975|sp|Q65J39|Y2933_BACLD Hypothetical UPF0291 protein BLi02035/BL02933 [Taxonomy]
- gi|52785789|ref|YP_091618.1| YnzC [Bacillus licheniformis ATCC 14580]
- gi|55738464|gb|AAV62105.1|_4:76 conserved hypothetical protein [Streptococcus thermophilus CNRZ1066]
- gi|55822479|ref|YP_140920.1| hypothetical protein str0508 [Streptococcus thermophilus CNRZ1066]
- gi|55820589|ref|YP_139031.1| hypothetical protein stu0508 [Streptococcus thermophilus LMG 18311]
- gi|62287941|sp|Q5M5H1|Y508_STRT2 Hypothetical UPF0291 protein stu0508 [Taxonomy]
- gi|62287940|sp|Q5M0Y4|Y508_STRT1 Hypothetical UPF0291 protein str0508 [Taxonomy]
- gi|55736574|gb|AAV60216.1| conserved hypothetical protein [Streptococcus thermophilus LMG 18311]
- gi|62527189|ref|ZP_00388480.1|_4:76 COG4224: Uncharacterized protein conserved in bacteria [Streptococcus thermophilus LMD-9]
- gi|76563010|gb|ABA45594.1|_4:76 conserved hypothetical protein [Streptococcus agalactiae A909]
- gi|22533284|gb|AAM99178.1| conserved hypothetical protein [Streptococcus agalactiae 2603V/R]
- gi|22536455|ref|NP_687306.1| hypothetical protein SAG0271 [Streptococcus agalactiae 2603V/R]
- gi|76787953|ref|YP_328995.1| hypothetical protein SAK_0343 [Streptococcus agalactiae A909]
- gi|23094687|emb|CAD45906.1| unknown [Streptococcus agalactiae NEM316]
- gi|25010335|ref|NP_734730.1| hypothetical protein gbs0261 [Streptococcus agalactiae NEM316]
- gi|38605587|sp|Q8E1T2|Y271_STRA5 Hypothetical UPF0291 protein SAG0271 [Taxonomy]
- gi|38605588|sp|Q8E796|Y261_STRA3 Hypothetical UPF0291 protein gbs0261 [Taxonomy]
- gi|77414058|ref|ZP_00790228.1| conserved hypothetical protein [Streptococcus agalactiae 515]
- gi|77410573|ref|ZP_00786933.1| conserved hypothetical protein [Streptococcus agalactiae CJB111]
- gi|77408190|ref|ZP_00784935.1| conserved hypothetical protein [Streptococcus agalactiae COH1]
- gi|77407411|ref|ZP_00784291.1| conserved hypothetical protein [Streptococcus agalactiae H36B]
- gi|77407267|ref|ZP_00784217.1| conserved hypothetical protein [Streptococcus agalactiae H36B]
- gi|77405006|ref|ZP_00782107.1| conserved hypothetical protein [Streptococcus agalactiae H36B]
- gi|77176445|gb|EAO79213.1| conserved hypothetical protein [Streptococcus agalactiae H36B]
- gi|77174124|gb|EAO77043.1| conserved hypothetical protein [Streptococcus agalactiae H36B]
- gi|77173981|gb|EAO76970.1| conserved hypothetical protein [Streptococcus agalactiae H36B]
- gi|77173205|gb|EAO76329.1| conserved hypothetical protein [Streptococcus agalactiae COH1]
- gi|77163288|gb|EAO74239.1| conserved hypothetical protein [Streptococcus agalactiae CJB111]
- gi|77159900|gb|EAO71041.1| conserved hypothetical protein [Streptococcus agalactiae 515]
- gi|76798314|ref|ZP_00780560.1| Hypothetical UPF0291 protein [Streptococcus agalactiae 18RS21]
- gi|76586344|gb|EAO62856.1| Hypothetical UPF0291 protein [Streptococcus agalactiae 18RS21]
- gi|81177282|ref|ZP_00876129.1|_4:76 protein of unknown function DUF896 [Streptococcus suis 89/1591]
- gi|80976041|gb|EAP39703.1| protein of unknown function DUF896 [Streptococcus suis 89/1591]
- gi|71853978|gb|AAZ52001.1|_4:76 hypothetical cytosolic protein [Streptococcus pyogenes MGAS5005]
- gi|50903851|gb|AAT87566.1| Hypothetical cytosolic protein [Streptococcus pyogenes MGAS10394]
- gi|94548398|gb|ABF38444.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS10750]
- gi|13622749|gb|AAK34442.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
- gi|94994890|ref|YP_602988.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS10750]
- gi|94992903|ref|YP_601002.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS2096]
- gi|94991011|ref|YP_599111.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS10270]
- gi|94989011|ref|YP_597112.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS9429]
- gi|94546411|gb|ABF36458.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS2096]
- gi|94544519|gb|ABF34567.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS10270]
- gi|94542519|gb|ABF32568.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS9429]
- gi|71803183|gb|AAX72536.1| hypothetical cytosolic protein [Streptococcus pyogenes MGAS6180]
- gi|50914777|ref|YP_060749.1| hypothetical protein M6_Spy1431 [Streptococcus pyogenes MGAS10394]
- gi|19748815|gb|AAL98233.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
- gi|21905214|gb|AAM80077.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
- gi|28810554|dbj|BAC63491.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
- gi|56807941|ref|ZP_00365760.1| COG4224: Uncharacterized protein conserved in bacteria [Streptococcus pyogenes M49 591]
- gi|21911006|ref|NP_665274.1| hypothetical protein SpyM3_1470 [Streptococcus pyogenes MGAS315]
- gi|28895308|ref|NP_801658.1| hypothetical protein SPs0396 [Streptococcus pyogenes SSI-1]
- gi|19746598|ref|NP_607734.1| hypothetical protein spyM18_1699 [Streptococcus pyogenes MGAS8232]
- gi|15675547|ref|NP_269721.1| hypothetical protein SPy1687 [Streptococcus pyogenes M1 GAS]
- gi|38605556|sp|P60081|Y1470_STRP3 UPF0291 protein SpyM3_1470/SPs0396 [Taxonomy]
- gi|62287971|sp|Q5XAJ7|Y1431_STRP6 Hypothetical UPF0291 protein M6_Spy1431 [Taxonomy]
- gi|38605557|sp|P60082|Y1699_STRP8 Hypothetical UPF0291 protein spyM18_1699 [Taxonomy]
- gi|38605555|sp|P60080|Y1687_STRP1 Hypothetical UPF0291 protein SPy1687/M5005_Spy1383 [Taxonomy]
- gi|71904088|ref|YP_280891.1| hypothetical protein M28_Spy1426 [Streptococcus pyogenes MGAS6180]
- gi|71911196|ref|YP_282746.1| hypothetical protein M5005_Spy_1383 [Streptococcus pyogenes MGAS5005]
- gi|24378936|ref|NP_720891.1|_4:76 hypothetical protein SMU.447 [Streptococcus mutans UA159]
- gi|24376822|gb|AAN58197.1| conserved hypothetical protein [Streptococcus mutans UA159]
- gi|38605586|sp|Q8DVN2|Y447_STRMU UPF0291 protein SMU.447 [Taxonomy]
- gi|48869765|ref|ZP_00322507.1|_6:79 COG4224: Uncharacterized protein conserved in bacteria [Pediococcus pentosaceus ATCC 25745]
- gi|28271530|emb|CAD64434.1|_1:76 unknown [Lactobacillus plantarum WCFS1]
- gi|28378693|ref|NP_785585.1| hypothetical protein lp_2062 [Lactobacillus plantarum WCFS1]
- gi|38605581|sp|Q88VI7|Y2062_LACPL Hypothetical UPF0291 protein lp_2062 [Taxonomy]
- gi|90961517|ref|YP_535433.1|_8:81 hypothetical protein LSL_0541 [Lactobacillus salivarius subsp. salivarius UCC118]
- gi|90820711|gb|ABD99350.1| Conserved hypothetical protein [Lactobacillus salivarius subsp. salivarius UCC118]
- gi|81428885|ref|YP_395885.1|_4:77 hypothetical protein LSA1274 [Lactobacillus sakei subsp. sakei 23K]
- gi|78610527|emb|CAI55578.1| Hypothetical protein [Lactobacillus sakei subsp. sakei 23K]
- gi|22777354|dbj|BAC13627.1|_1:73 hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
- gi|38605589|sp|Q8EQM4|Y1671_OCEIH Hypothetical UPF0291 protein OB1671 [Taxonomy]
- gi|23099126|ref|NP_692592.1| hypothetical protein OB1671 [Oceanobacillus iheyensis HTE831]
- gi|89090941|ref|ZP_01163973.1|_9:80 conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
- gi|89079242|gb|EAR58541.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
- gi|16413815|emb|CAC96573.1|_1:71 lin1342 [Listeria innocua]
- gi|38605608|sp|Q92C49|Y1342_LISIN Hypothetical UPF0291 protein lin1342 [Taxonomy]
- gi|16800410|ref|NP_470678.1| hypothetical protein lin1342 [Listeria innocua Clip11262]
- gi|47096929|ref|ZP_00234506.1|_1:71 conserved hypothetical protein [Listeria monocytogenes str. 1/2a F6854]
- gi|47014689|gb|EAL05645.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F6854]
- gi|38605605|sp|Q8Y7H5|Y1304_LISMO Hypothetical UPF0291 protein lmo1304 [Taxonomy]
- gi|16410720|emb|CAC99382.1| lmo1304 [Listeria monocytogenes]
- gi|16803344|ref|NP_464829.1| hypothetical protein lmo1304 [Listeria monocytogenes EGD-e]
- gi|68056500|ref|ZP_00540617.1|_1:72 protein of unknown function DUF896 [Exiguobacterium sibiricum 255-15]
- gi|68006909|gb|EAM86205.1| protein of unknown function DUF896 [Exiguobacterium sibiricum 255-15]
- gi|46907531|ref|YP_013920.1|_1:71 hypothetical protein LMOf2365_1322 [Listeria monocytogenes str. 4b F2365]
- gi|62287990|sp|Q720B7|Y1322_LISMF UPF0291 protein LMOf2365_1322 [Taxonomy]
- gi|46880799|gb|AAT04097.1| conserved hypothetical protein [Listeria monocytogenes str. 4b F2365]
- gi|47094163|ref|ZP_00231882.1|_1:71 conserved hypothetical protein [Listeria monocytogenes str. 4b H7858]
- gi|47017468|gb|EAL08282.1| conserved hypothetical protein [Listeria monocytogenes str. 4b H7858]
- gi|57637490|gb|AAW54278.1|_7:74 conserved hypothetical protein [Staphylococcus epidermidis RP62A]
- gi|57866832|ref|YP_188490.1| hypothetical protein SERP0911 [Staphylococcus epidermidis RP62A]
- gi|27315487|gb|AAO04621.1| conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228]
- gi|38605584|sp|Q8CSP4|Y1024_STAES UPF0291 protein SE_1024 [Taxonomy]
- gi|27467942|ref|NP_764579.1| hypothetical protein SE1024 [Staphylococcus epidermidis ATCC 12228]
- gi|62287938|sp|Q5HPK0|Y911_STAEQ Hypothetical UPF0291 protein SERP0911 [Taxonomy]
- gi|82465334|emb|CAJ43429.1|_1:71 YnzC protein [Bacillus megaterium]
- gi|10174973|dbj|BAB06072.1|_1:71 BH2353 [Bacillus halodurans C-125]
- gi|38605618|sp|Q9KAD6|Y2353_BACHD Hypothetical UPF0291 protein BH2353 [Taxonomy]
- gi|15614916|ref|NP_243219.1| hypothetical protein BH2353 [Bacillus halodurans C-125]
- gi|65319214|ref|ZP_00392173.1|_4:76 COG4224: Uncharacterized protein conserved in bacteria [Bacillus anthracis str. A2012]
- gi|49330992|gb|AAT61638.1|_1:73 conserved hypothetical protein [Bacillus thuringiensis serovar konkukian str. 97-27]
- gi|47504190|gb|AAT32866.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames Ancestor']
- gi|49180408|gb|AAT55784.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
- gi|51975320|gb|AAU16870.1| conserved hypothetical protein [Bacillus cereus E33L]
- gi|47529042|ref|YP_020391.1| hypothetical protein GBAA3752 [Bacillus anthracis str. 'Ames Ancestor']
- gi|49479436|ref|YP_037764.1| hypothetical protein BT9727_3443 [Bacillus thuringiensis serovar konkukian str. 97-27]
- gi|49186481|ref|YP_029733.1| hypothetical protein BAS3478 [Bacillus anthracis str. Sterne]
- gi|47606078|sp|P61462|Y3725_BACC1 UPF0291 protein BCE_3725 [Taxonomy]
- gi|42782775|ref|NP_980022.1| hypothetical protein BCE3725 [Bacillus cereus ATCC 10987]
- gi|47569213|ref|ZP_00239899.1| hypothetical protein cytosolic protein-related protein [Bacillus cereus G9241]
- gi|47554087|gb|EAL12452.1| hypothetical protein cytosolic protein-related protein [Bacillus cereus G9241]
- gi|38605575|sp|Q81Y08|Y3752_BACAN UPF0291 protein BA3752/GBAA3752/BAS3478 [Taxonomy]
- gi|30258270|gb|AAP27498.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
- gi|42738702|gb|AAS42630.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
- gi|62287984|sp|Q6HFB2|Y3443_BACHK Hypothetical UPF0291 protein BT9727_3443 [Taxonomy]
- gi|62287972|sp|Q637D9|Y3394_BACCZ Hypothetical UPF0291 protein BCE33L3394 [Taxonomy]
- gi|52141851|ref|YP_084978.1| hypothetical protein BCZK3394 [Bacillus cereus E33L]
- gi|30263635|ref|NP_846012.1| hypothetical protein BA3752 [Bacillus anthracis str. Ames]
- gi|65320960|ref|ZP_00393919.1| COG4224: Uncharacterized protein conserved in bacteria [Bacillus anthracis str. A2012]
- gi|38605572|sp|Q812Y7|Y3688_BACCR_1:73 UPF0291 protein BC_3688 [Taxonomy]
- gi|29897341|gb|AAP10617.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579]
- gi|30021785|ref|NP_833416.1| hypothetical protein BC3688 [Bacillus cereus ATCC 14579]
- gi|14247112|dbj|BAB57503.1|_7:74 conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50]
- gi|49483533|ref|YP_040757.1| hypothetical protein SAR1351 [Staphylococcus aureus subsp. aureus MRSA252]
- gi|88195065|ref|YP_499865.1| hypothetical protein SAOUHSC_01336 [Staphylococcus aureus subsp. aureus NCTC 8325]
- gi|87160891|ref|YP_493935.1| hypothetical protein SAUSA300_1238 [Staphylococcus aureus subsp. aureus USA300]
- gi|57284531|gb|AAW36625.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus COL]
- gi|87202623|gb|ABD30433.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325]
- gi|87126865|gb|ABD21379.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300]
- gi|49244628|emb|CAG43059.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476]
- gi|21204396|dbj|BAB95093.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2]
- gi|13701139|dbj|BAB42434.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315]
- gi|82750935|ref|YP_416676.1| hypothetical protein SAB1199 [Staphylococcus aureus RF122]
- gi|15926922|ref|NP_374455.1| hypothetical protein SA1176 [Staphylococcus aureus subsp. aureus N315]
- gi|15924331|ref|NP_371865.1| hypothetical protein SAV1341 [Staphylococcus aureus subsp. aureus Mu50]
- gi|57650345|ref|YP_186229.1| hypothetical protein SACOL1376 [Staphylococcus aureus subsp. aureus COL]
- gi|49241662|emb|CAG40350.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252]
- gi|62287961|sp|Q5HG78|Y1376_STAAC Hypothetical UPF0291 protein SACOL1376 [Taxonomy]
- gi|56749715|sp|Q6G9L7|Y1281_STAAS Hypothetical UPF0291 protein SAS1281 [Taxonomy]
- gi|90587104|ref|ZP_01242779.1| Protein of unknown function DUF896, bacterial [Staphylococcus aureus subsp. aureus JH9]
- gi|90584462|ref|ZP_01240190.1| Protein of unknown function DUF896, bacterial [Staphylococcus aureus subsp. aureus JH1]
- gi|38605549|sp|P60074|Y1341_STAAM Hypothetical UPF0291 protein SAV1341 [Taxonomy]
- gi|38605553|sp|P60078|Y1228_STAAW Hypothetical UPF0291 protein MW1228 [Taxonomy]
- gi|38605551|sp|P60076|Y1176_STAAN Hypothetical UPF0291 protein SA1176 [Taxonomy]
- gi|90429305|gb|EAS54722.1| Protein of unknown function DUF896, bacterial [Staphylococcus aureus subsp. aureus JH9]
- gi|90426482|gb|EAS51958.1| Protein of unknown function DUF896, bacterial [Staphylococcus aureus subsp. aureus JH1]
- gi|82656466|emb|CAI80888.1| conserved hypothetical protein [Staphylococcus aureus RF122]
- gi|49486185|ref|YP_043406.1| hypothetical protein SAS1281 [Staphylococcus aureus subsp. aureus MSSA476]
- gi|56749744|sp|Q6GH65|Y1351_STAAR Hypothetical UPF0291 protein SAR1351 [Taxonomy]
- gi|21282957|ref|NP_646045.1| hypothetical protein MW1228 [Staphylococcus aureus subsp. aureus MW2]
- gi|75759775|ref|ZP_00739853.1|_4:76 Hypothetical cytosolic protein [Bacillus thuringiensis serovar israelensis ATCC 35646]
- gi|74492725|gb|EAO55863.1| Hypothetical cytosolic protein [Bacillus thuringiensis serovar israelensis ATCC 35646]
- gi|68447291|dbj|BAE04875.1|_7:73 unnamed protein product [Staphylococcus haemolyticus JCSC1435]
- gi|70726567|ref|YP_253481.1| hypothetical protein SH1566 [Staphylococcus haemolyticus JCSC1435]
- gi|49331224|gb|AAT61870.1|_3:73 conserved hypothetical protein [Bacillus thuringiensis serovar konkukian str. 97-27]
- gi|51976994|gb|AAU18544.1| conserved hypothetical protein [Bacillus cereus E33L]
- gi|49479668|ref|YP_036069.1| hypothetical protein BT9727_1737 [Bacillus thuringiensis serovar konkukian str. 97-27]
- gi|62287973|sp|Q63CR4|Y1708_BACCZ Hypothetical UPF0291 protein BCE33L1708 [Taxonomy]
- gi|52143525|ref|YP_083303.1| hypothetical protein BCZK1708 [Bacillus cereus E33L]
- gi|62287985|sp|Q6HK57|Y1737_BACHK Hypothetical UPF0291 protein BT9727_1737 [Taxonomy]
- gi|89202186|ref|ZP_01180915.1|_1:74 Protein of unknown function DUF896, bacterial [Bacillus cereus subsp. cytotoxis NVH 391-98]
- gi|89149816|gb|EAR70334.1| Protein of unknown function DUF896, bacterial [Bacillus cereus subsp. cytotoxis NVH 391-98]
- gi|47606232|sp|P61461|Y1981_BACC1_3:73 UPF0291 protein BCE_1981 [Taxonomy]
- gi|42781050|ref|NP_978297.1| hypothetical protein BCE1981 [Bacillus cereus ATCC 10987]
- gi|42736971|gb|AAS40905.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
- gi|38605573|sp|Q813Q5|Y1827_BACCR_3:73 UPF0291 protein BC_1827 [Taxonomy]
- gi|29895514|gb|AAP08801.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579]
- gi|30019969|ref|NP_831600.1| hypothetical protein BC1827 [Bacillus cereus ATCC 14579]
- gi|89208871|ref|ZP_01187352.1|_2:73 Protein of unknown function DUF896, bacterial [Bacillus weihenstephanensis KBAB4]
- gi|89153186|gb|EAR73274.1| Protein of unknown function DUF896, bacterial [Bacillus weihenstephanensis KBAB4]
- gi|66877483|ref|ZP_00403041.1|_4:67 COG4224: Uncharacterized protein conserved in bacteria [Streptococcus pneumoniae TIGR4]
- gi|47502339|gb|AAT31015.1|_3:73 conserved hypothetical protein [Bacillus anthracis str. 'Ames Ancestor']
- gi|49178698|gb|AAT54074.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
- gi|47527191|ref|YP_018540.1| hypothetical protein GBAA1897 [Bacillus anthracis str. 'Ames Ancestor']
- gi|49184771|ref|YP_028023.1| hypothetical protein BAS1759 [Bacillus anthracis str. Sterne]
- gi|38605574|sp|Q81RY8|Y1897_BACAN UPF0291 protein BA1897/GBAA1897/BAS1759 [Taxonomy]
- gi|30256557|gb|AAP25794.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
- gi|30261931|ref|NP_844308.1| hypothetical protein BA1897 [Bacillus anthracis str. Ames]
- gi|56379708|dbj|BAD75616.1|_2:72 hypothetical conserved protein [Geobacillus kaustophilus HTA426]
- gi|56419866|ref|YP_147184.1| hypothetical protein GK1331 [Geobacillus kaustophilus HTA426]
- gi|62287966|sp|Q5L0C0|Y1331_GEOKA Hypothetical UPF0291 protein GK1331 [Taxonomy]
- gi|68446205|dbj|BAE03789.1|_3:72 unnamed protein product [Staphylococcus haemolyticus JCSC1435]
- gi|70725481|ref|YP_252395.1| hypothetical protein SH0480 [Staphylococcus haemolyticus JCSC1435]
- gi|89101004|ref|ZP_01173848.1|_2:71 YnzC [Bacillus sp. NRRL B-14911]
- gi|89084300|gb|EAR63457.1| YnzC [Bacillus sp. NRRL B-14911]
- gi|73662726|ref|YP_301507.1|_9:71 hypothetical protein SSP1417 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305]
- gi|72495241|dbj|BAE18562.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305]
- gi|14248347|dbj|BAB58735.1|_4:72 conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50]
- gi|49484772|ref|YP_041996.1| hypothetical protein SAR2654 [Staphylococcus aureus subsp. aureus MRSA252]
- gi|88196521|ref|YP_501346.1| hypothetical protein SAOUHSC_02893 [Staphylococcus aureus subsp. aureus NCTC 8325]
- gi|87162422|ref|YP_495145.1| hypothetical protein SAUSA300_2511 [Staphylococcus aureus subsp. aureus USA300]
- gi|57286496|gb|AAW38590.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus COL]
- gi|87204079|gb|ABD31889.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325]
- gi|87128396|gb|ABD22910.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300]
- gi|49245796|emb|CAG44276.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476]
- gi|21205666|dbj|BAB96359.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2]
- gi|13702523|dbj|BAB43664.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315]
- gi|82752155|ref|YP_417896.1| hypothetical protein SAB2447 [Staphylococcus aureus RF122]
- gi|15928152|ref|NP_375685.1| hypothetical protein SA2360 [Staphylococcus aureus subsp. aureus N315]
- gi|15925563|ref|NP_373097.1| hypothetical protein SAV2573 [Staphylococcus aureus subsp. aureus Mu50]
- gi|57652310|ref|YP_187380.1| hypothetical protein SACOL2589 [Staphylococcus aureus subsp. aureus COL]
- gi|49242901|emb|CAG41631.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252]
- gi|56749726|sp|Q6GDM7|Y2654_STAAR Hypothetical UPF0291 protein SAR2654 [Taxonomy]
- gi|62287958|sp|Q5HCX7|Y2589_STAAC Hypothetical UPF0291 protein SACOL2589 [Taxonomy]
- gi|56749697|sp|Q6G6A0|Y2460_STAAS Hypothetical UPF0291 protein SAS2460 [Taxonomy]
- gi|90584623|ref|ZP_01240336.1| Protein of unknown function DUF896, bacterial [Staphylococcus aureus subsp. aureus JH9]
- gi|90581908|ref|ZP_01237673.1| Protein of unknown function DUF896, bacterial [Staphylococcus aureus subsp. aureus JH1]
- gi|38605550|sp|P60075|Y2573_STAAM Hypothetical UPF0291 protein SAV2573 [Taxonomy]
- gi|38605554|sp|P60079|Y2494_STAAW Hypothetical UPF0291 protein MW2494 [Taxonomy]
- gi|38605552|sp|P60077|Y2360_STAAN Hypothetical UPF0291 protein SA2360 [Taxonomy]
- gi|90431680|gb|EAS57059.1| Protein of unknown function DUF896, bacterial [Staphylococcus aureus subsp. aureus JH9]
- gi|90428904|gb|EAS54343.1| Protein of unknown function DUF896, bacterial [Staphylococcus aureus subsp. aureus JH1]
- gi|82657686|emb|CAI82135.1| conserved hypothetical protein [Staphylococcus aureus RF122]
- gi|49487353|ref|YP_044574.1| hypothetical protein SAS2460 [Staphylococcus aureus subsp. aureus MSSA476]
- gi|21284223|ref|NP_647311.1| hypothetical protein MW2494 [Staphylococcus aureus subsp. aureus MW2]
- gi|73661589|ref|YP_300370.1|_4:71 hypothetical protein SSP0280 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305]
- gi|72494104|dbj|BAE17425.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305]
- gi|62464027|ref|ZP_00383331.1|_5:78 COG4224: Uncharacterized protein conserved in bacteria [Lactococcus lactis subsp. cremoris SK11]
- gi|12724054|gb|AAK05195.1|_5:78 HYPOTHETICAL PROTEIN [Lactococcus lactis subsp. lactis Il1403]
- gi|15673079|ref|NP_267253.1| hypothetical protein L104681 [Lactococcus lactis subsp. lactis Il1403]
- gi|38605615|sp|Q9CGJ9|YLAC_LACLA UPF0291 protein ylaC [Taxonomy]
- gi|42519379|ref|NP_965309.1|_8:79 hypothetical protein LJ1507 [Lactobacillus johnsonii NCC 533]
- gi|41583667|gb|AAS09275.1| hypothetical protein LJ_1507 [Lactobacillus johnsonii NCC 533]
- gi|47606233|sp|P61463|Y1507_LACJO UPF0291 protein LJ_1507 [Taxonomy]
- gi|52857773|ref|ZP_00047484.2|_8:79 hypothetical protein Lgas_03001872 [Lactobacillus gasseri ATCC 33323]
- gi|56910173|dbj|BAD64700.1|_3:70 conserved hypothetical protein [Bacillus clausii KSM-K16]
- gi|62287970|sp|Q5WG05|Y2165_BACSK Hypothetical UPF0291 protein ABC2165 [Taxonomy]
- gi|56963930|ref|YP_175661.1| hypothetical protein ABC2165 [Bacillus clausii KSM-K16]
- gi|104774234|ref|YP_619214.1|_7:75 hypothetical protein Ldb1355 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
- gi|103423315|emb|CAI98156.1| Conserved hypothetical protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
- gi|16412937|emb|CAC95729.1|_4:69 lin0497 [Listeria innocua]
- gi|46906742|ref|YP_013131.1| hypothetical protein LMOf2365_0526 [Listeria monocytogenes str. 4b F2365]
- gi|47094722|ref|ZP_00232337.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F6854]
- gi|47093121|ref|ZP_00230897.1| conserved hypothetical protein [Listeria monocytogenes str. 4b H7858]
- gi|47018494|gb|EAL09251.1| conserved hypothetical protein [Listeria monocytogenes str. 4b H7858]
- gi|47016862|gb|EAL07780.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F6854]
- gi|62287948|sp|Q723F3|Y526_LISMF UPF0291 protein LMOf2365_0526 [Taxonomy]
- gi|16409872|emb|CAC98575.1| lmo0496 [Listeria monocytogenes]
- gi|46880007|gb|AAT03308.1| conserved hypothetical protein [Listeria monocytogenes str. 4b F2365]
- gi|38605547|sp|P60072|Y497_LISIN Hypothetical UPF0291 protein lin0497 [Taxonomy]
- gi|38605548|sp|P60073|Y496_LISMO Hypothetical UPF0291 protein lmo0496 [Taxonomy]
- gi|16799572|ref|NP_469840.1| hypothetical protein lin0497 [Listeria innocua Clip11262]
- gi|16802539|ref|NP_464024.1| hypothetical protein lmo0496 [Listeria monocytogenes EGD-e]
- gi|50363722|gb|AAT75707.1|_8:77 unknown protein [Mesoplasma florum L1]
- gi|50365166|ref|YP_053591.1| hypothetical protein Mfl350 [Mesoplasma florum L1]
- gi|48865051|ref|ZP_00318917.1|_30:100 COG4224: Uncharacterized protein conserved in bacteria [Oenococcus oeni PSU-1]
- gi|38605577|sp|Q839T8|Y064_ENTFA_4:70 UPF0291 protein EF_0064 [Taxonomy]
- gi|29342178|gb|AAO79944.1| conserved hypothetical protein [Enterococcus faecalis V583]
- gi|29374720|ref|NP_813872.1| hypothetical protein EF0064 [Enterococcus faecalis V583]
- gi|106888036|ref|ZP_01355290.1|_5:58 Protein of unknown function DUF896 [Clostridium phytofermentans ISDg]
- gi|106764459|gb|EAT21284.1| Protein of unknown function DUF896 [Clostridium phytofermentans ISDg]
- gi|58254872|gb|AAV43109.1|_12:83 hypothetical protein LBA1279 [Lactobacillus acidophilus NCFM]
- gi|62287956|sp|Q5FJL5|Y1279_LACAC Hypothetical UPF0291 protein LBA1279 [Taxonomy]
- gi|58337555|ref|YP_194140.1| hypothetical protein LBA1279 [Lactobacillus acidophilus NCFM]
- gi|106893507|ref|ZP_01360632.1|_1:55 Protein of unknown function DUF896 [Clostridium sp. OhILAs]
- gi|106775243|gb|EAT31802.1| Protein of unknown function DUF896 [Clostridium sp. OhILAs]
- gi|90575507|ref|ZP_01231990.1|_1:57 hypothetical protein CdifQ_02001066 [Clostridium difficile QCD-32g58]
- gi|88946329|ref|ZP_01149410.1|_19:73 similar to Uncharacterized protein conserved in bacteria [Desulfotomaculum reducens MI-1]
- gi|88924150|gb|EAR43156.1| similar to Uncharacterized protein conserved in bacteria [Desulfotomaculum reducens MI-1]
- gi|77685899|ref|ZP_00801279.1|_4:58 protein of unknown function DUF896 [Alkaliphilus metalliredigenes QYMF]
- gi|77638325|gb|EAO80733.1| protein of unknown function DUF896 [Alkaliphilus metalliredigenes QYMF]
- gi|76796608|ref|ZP_00778966.1|_2:53 protein of unknown function DUF896 [Thermoanaerobacter ethanolicus ATCC 33223]
- gi|76588044|gb|EAO64458.1| protein of unknown function DUF896 [Thermoanaerobacter ethanolicus ATCC 33223]
- gi|20517345|gb|AAM25481.1|_1:49 hypothetical protein TTE2340 [Thermoanaerobacter tengcongensis MB4]
- gi|38605596|sp|Q8R7Q8|Y2340_THETN Hypothetical UPF0291 protein TTE2340 [Taxonomy]
- gi|20808706|ref|NP_623877.1| hypothetical protein TTE2340 [Thermoanaerobacter tengcongensis MB4]
- gi|89333800|dbj|BAE83395.1|_4:53 hypothetical protein [Desulfitobacterium hafniense Y51]
- gi|89894352|ref|YP_517839.1| hypothetical protein DSY1606 [Desulfitobacterium hafniense Y51]
- gi|68209177|ref|ZP_00561232.1| protein of unknown function DUF896 [Desulfitobacterium hafniense DCB-2]
- gi|68166940|gb|EAM94971.1| protein of unknown function DUF896 [Desulfitobacterium hafniense DCB-2]
- gi|71491838|gb|EAO24153.1|_4:51 protein of unknown function DUF896 [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
- gi|71541556|ref|ZP_00663298.1| protein of unknown function DUF896 [Syntrophomonas wolfei str. Goettingen]
- gi|18144664|dbj|BAB80709.1|_4:52 hypothetical protein [Clostridium perfringens str. 13]
- gi|18309985|ref|NP_561919.1| hypothetical protein CPE1003 [Clostridium perfringens str. 13]
- gi|38605603|sp|Q8XLN8|Y1003_CLOPE Hypothetical UPF0291 protein CPE1003 [Taxonomy]
- gi|19713461|gb|AAL94254.1|_2:57 unknown [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
- gi|19703393|ref|NP_602955.1| hypothetical protein FN0041 [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
- gi|34763749|ref|ZP_00144668.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
- gi|27886485|gb|EAA23741.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
- gi|15025761|gb|AAK80672.1|_2:50 Uncharacterized protein, possible ynzC B.subtilis homolog [Clostridium acetobutylicum ATCC 824]
- gi|15895983|ref|NP_349332.1| Uncharacterized protein, possible ynzC B.subtilis homolog [Clostridium acetobutylicum ATCC 824]
- gi|38605612|sp|Q97FL0|Y2726_CLOAB UPF0291 protein CAC2726 [Taxonomy]
- gi|38605558|sp|P60083|Y1690_CLOTE_4:52 UPF0291 protein CTC_01690.1 [Taxonomy]
- gi|82749622|ref|ZP_00912063.1|_11:59 conserved hypothetical protein [Clostridium beijerincki NCIMB 8052]
- gi|82722518|gb|EAP57326.1| conserved hypothetical protein [Clostridium beijerincki NCIMB 8052]

              10         20        30        40        50         60   
              |          |         |         |         |          |   
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  10 ----KKIARINELAKKKKT.VGLTGPEKVEQAKLREEYIEGYRRSVRHHIEGIKLVDEE.GNDVT
  11 ----TKIDRINELARKKKT.EGLTGAEKLEQERLREEYIEGYRRSIRHHIEGLKIVDEE.GNDIT
  12 --MQKLIKRINELAKKAKE.EGLSDLEIIERKDLRQKYLKKFRESFRSQVEMMQIFDKE.GKEVT
  13 MISKELLARINELAHKAKA.EGLTELEEAERQELRQKYLKEFRAGFRQQVEMLQVYDKD.GKEVT
  14 --PQELIDRINELSKKKKE.EGLTSEELAEQKELRETYLSLFRENFRSHIEMLQVYDKN.GKEVT
  15 --DQKRLDRINELAHKAKA.EGLTPEETMERQELRDAYLKDFRSSFRSQVEMLQVYDKE.GKEVT
  16 MLSKDKLDRINVLSKKSKE.EGLTTEEKAEQKKLREEYLKNVRSSFKNQLSTVTVLDPE.GKDVT
  17 ----ALLKRINELAHKNKE.EGLTEEETKERDRLRKEYLKNFREAMRSNIEMMRIFDKE.GKEVT
  18 MLEKAKIDRINELSKKKKA.GTLTADEKVEQEKLRKEYIKSFRTHMKGTIENTTIIDPK.GNDVT
  19 MLEKAKIDRINELSKKKKA.GTLTSAEKVEQDKLRKEYIKSFRTHMKGTIENTTIIDPN.GKDVT
  20 MLSQEQLDRINELANKSKV.EPLTDAETAEQKELRTAYLEAFRGSFKNQMMGIKIVDEE.GTDVT
  21 MLEKAKIDRINELSKKKKA.GTLTATEKVEQDKLRKEYIKSFRTHMKGTIENTTIIDPN.GTDVT
  22 MLEKAKIDRINELSKKKKA.GTLTATEKVEQDNLRKEYIKSFRTHMKGTIENTTIIDPN.GKDVT
  23 -----NIDRINELARKKKE.HGLTNEEAKEQTKLRRQYLEEFRKGFKQQIENTKVIDPE.GNDVT
  24 MLSKDKLARINALSKKAKA.EGLTESEAKEQQELRQEYLKVFRQSMTNHLHTIKVVDEE.GKDVT
  25 MLSKQKIERINELAKRAKT.TGLTEDELREQKKLREEYIQQFRQSFKNQLHSVTVVDGA.GNDVT
  26 --MKNTLFRINELSKKEKA.TGLTVDEKQEQQMLRQNYTQTFRGSLDSILLNTKIVDQN.GLNVT
  27 MLSHELVERINFLAKKAKA.EGLTEEEQRERQSLREQYLKGFRQNMLNELKGIKVVNEQ.GTDVT
  28 MINHELVERINFLAKKAKA.EGLTEEEQRERQSLREQYLKGFRQNMLNELKGIKVVNEE.GTDVT
  29 -----NIERINELAKKKKE.VGLTQEEAKEQTALRKAYLESFRKGFKQQIENTKVIDPE.GNDVT
  30 --MQNILFRINELSKKERT.SGLTVDEKQEQQMLRQNYTETFRGSLDSILLNTKIVDPN.GLNVT
  31 -----NIDRINELAKKKKE.QGLTEAEAKEQSKLRKKYLEAFRKGFKQQIESTKVIDPE.GNDVT
  32 ----NILFRINELSKKEKA.TGLTVDEKQEQQMLRQNYTQTFRGSLDSILLNTKIVDQN.GLNVT
  33 MLSHELIERINFLARKAKN.EGLTEEEQRERQSLREQYLKGFRQNMLNELKGIKIVNEE.GKDIT
  34 ----NILFRINELSKKEKV.SGLTVDEKQEQQMLRQNYTQTFRGSLDSILLNTKIVDQN.GHNVT
  35 ----NILFRINELSKKEKA.TGLTVDEKQEQQMLRQNYTETFRGSLDSILLNTKIVDQN.GLNVT
  36 -PSQELIERINFLAKKAKA.EGLTEEEQRERQSLREQYLKGFRQNMLNELKGIKVVNEE.GTDVT
  37 -------------LKKKKT.EGLTPEEKVEQAKLREEYIEGYRRAVRHHIEGIKIVDEE.GNDVT
  38 ----NTLFRINELSKKEKA.TGLTVDEKQEQQMLRQNYTQTFRGSLDSILLNTKIVDQN.GLNVT
  39 -LAKHKLARINELAKKAKT.AGLSAEEAFEQAKLRREYIQAFRKAMTDMLHTVTVIDPS.GNDVT
  40 ----ELLDRINQLANKEKV.ESLSVEEKQEQHQLRQEYLGMIRGQVLHTFSTMKVLDPL.GQDVT
  41 -LPKDKMARINELANKAKT.AGLTNEEAKEQTKLRSEYLQTFRSNMLTTLKGVTIMDPK.GNDVT
  42 ------IKRINELAKKKKE.QGLTENEAKEQSKLRKAYLESFRKNFKQQIESTRVIDPE.GNDVT
  43 ------LDRINELANKEKV.QPLTVAEKQEQHALRQDYLSMIRGQVLTTFSTIKVVDPI.GQDVT
  44 ------LDRINELANKEKI.ETLSIEEKEEQQTLRQEYLKMIRGQVIHTFSTLKVVDPL.GEDVT
  45 ---NEQVERINELARKKKA.EGLSEAELEEQAFLRRAYLDSVKANFRSQVETIKVIDEKtGEDVT
  46 ---NEQVERINELARKKKA.EGLSEAELEEQALLRRAYLDSVKANFRSQVETIKVIDEKtGEDVT
  47 ----NLIKRINELTKISRE.RELTPDELEERKKLRSAFLENFRAGFRQQLEDTVVIDKD.GKEVT
  48 ----KLIKRINELTKISRE.RELTPGEVEERKKLRSAFLENFRAGFRQQLEDTVVIDEN.GKEVT
  49 ---KEKLDRINELSKLAKT.VGLTKKQAMEQKALRNEYLSAFRSSFTDHLHTVKVVDAK.GNDVT
  50 -----VRKRINELYKKKQE.SGLTEAEEAERKELHKQFIANFRAGFKQQLDSLVIVDDQ.GKDVT
  51 -----LLKNINELAAKQKS.EGLTAFEKERQAALRQEYLKKIRGTVQDNLHHVTIIDPL.GDDVT
  52 -SMPEVIQEINRLAKIKKD.RELTSEESAYREELKVLYLNYFRNGFEQQLKSTKVIDAQ.GNDVT
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  59 --TKELVDRINALARKQRA.EGLTPAEKEEQHQLRQQYLKGIRGQVIDQLSRIKFVED-.-----
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