# TARGET T0335 # Using neural net dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-o_notor2-from-empty.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 o_notor2 ) # The input amino acid frequencies were determined from # alignment T0335.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 8.88122 # Pos AA G H I P A B S F J M N 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.039 0.578 0.012 0.009 0.010 0.014 0.045 0.011 0.002 0.063 0.218 2 I 0.046 0.686 0.011 0.004 0.006 0.006 0.021 0.011 0.003 0.034 0.173 3 S 0.026 0.895 0.001 0.001 0.001 0.002 0.007 0.004 0.001 0.006 0.058 4 N 0.030 0.864 0.001 0.002 0.001 0.002 0.009 0.003 0.001 0.022 0.066 5 A 0.009 0.878 0.009 0.002 0.001 0.001 0.011 0.003 0.002 0.041 0.043 6 K 0.015 0.908 0.001 0.001 0.001 0.001 0.009 0.003 0.001 0.020 0.041 7 I 0.021 0.639 0.002 0.003 0.002 0.001 0.014 0.002 0.001 0.260 0.055 8 A 0.005 0.896 0.001 0.003 0.001 0.001 0.010 0.001 0.001 0.052 0.032 9 R 0.002 0.969 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.009 0.013 10 I 0.003 0.980 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.006 0.006 11 N 0.002 0.985 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.007 12 E 0.004 0.972 0.002 0.001 0.001 0.001 0.002 0.002 0.001 0.006 0.011 13 L 0.012 0.955 0.002 0.001 0.001 0.001 0.003 0.005 0.001 0.009 0.012 14 A 0.020 0.763 0.009 0.002 0.001 0.001 0.012 0.005 0.003 0.125 0.060 15 A 0.035 0.596 0.014 0.002 0.001 0.002 0.029 0.005 0.006 0.180 0.131 16 K 0.075 0.339 0.105 0.003 0.001 0.003 0.042 0.016 0.055 0.166 0.193 17 A 0.319 0.096 0.038 0.004 0.002 0.005 0.051 0.018 0.023 0.070 0.375 18 K 0.201 0.054 0.003 0.004 0.001 0.004 0.038 0.006 0.003 0.030 0.657 19 A 0.052 0.016 0.001 0.003 0.001 0.003 0.050 0.002 0.001 0.015 0.856 20 G 0.030 0.011 0.001 0.011 0.003 0.008 0.077 0.002 0.001 0.024 0.834 21 V 0.012 0.012 0.001 0.010 0.007 0.008 0.101 0.001 0.001 0.024 0.825 22 I 0.002 0.025 0.001 0.019 0.009 0.009 0.097 0.003 0.001 0.022 0.814 23 T 0.030 0.882 0.001 0.003 0.001 0.001 0.012 0.005 0.001 0.011 0.053 24 E 0.022 0.936 0.002 0.002 0.001 0.001 0.004 0.002 0.001 0.010 0.022 25 E 0.006 0.932 0.001 0.001 0.001 0.001 0.005 0.002 0.001 0.022 0.030 26 E 0.008 0.945 0.001 0.001 0.001 0.001 0.003 0.002 0.001 0.025 0.016 27 K 0.011 0.910 0.001 0.001 0.001 0.001 0.003 0.002 0.001 0.059 0.013 28 A 0.009 0.792 0.003 0.002 0.001 0.001 0.008 0.001 0.001 0.151 0.032 29 E 0.003 0.938 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.027 0.024 30 Q 0.002 0.970 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.013 0.011 31 Q 0.006 0.894 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.084 0.012 32 K 0.005 0.830 0.002 0.001 0.001 0.001 0.004 0.001 0.001 0.136 0.021 33 L 0.005 0.932 0.005 0.001 0.001 0.001 0.003 0.004 0.001 0.036 0.014 34 R 0.009 0.966 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.010 0.010 35 Q 0.011 0.836 0.001 0.001 0.001 0.001 0.007 0.001 0.001 0.089 0.054 36 E 0.011 0.873 0.005 0.001 0.001 0.001 0.012 0.002 0.001 0.052 0.043 37 Y 0.014 0.907 0.007 0.001 0.001 0.001 0.007 0.007 0.002 0.026 0.028 38 L 0.041 0.898 0.003 0.001 0.001 0.001 0.006 0.005 0.001 0.014 0.030 39 K 0.040 0.721 0.001 0.003 0.001 0.001 0.019 0.002 0.001 0.057 0.156 40 G 0.015 0.501 0.030 0.005 0.001 0.001 0.046 0.004 0.007 0.219 0.171 41 F 0.039 0.842 0.006 0.003 0.001 0.001 0.018 0.011 0.001 0.026 0.053 42 R 0.047 0.809 0.003 0.002 0.001 0.001 0.010 0.006 0.001 0.021 0.098 43 S 0.056 0.541 0.002 0.006 0.001 0.002 0.040 0.003 0.001 0.106 0.241 44 S 0.011 0.308 0.010 0.009 0.002 0.003 0.037 0.004 0.003 0.471 0.143 45 M 0.055 0.783 0.011 0.002 0.002 0.003 0.018 0.027 0.001 0.027 0.071 46 K 0.091 0.498 0.007 0.009 0.002 0.004 0.024 0.008 0.003 0.065 0.287 47 N 0.075 0.093 0.032 0.012 0.004 0.008 0.084 0.005 0.018 0.298 0.372 48 T 0.253 0.118 0.006 0.015 0.004 0.010 0.108 0.021 0.003 0.113 0.348 49 L 0.158 0.040 0.024 0.035 0.006 0.012 0.112 0.016 0.013 0.079 0.507 50 K 0.045 0.022 0.002 0.089 0.014 0.018 0.172 0.002 0.001 0.026 0.609 51 S 0.007 0.005 0.001 0.084 0.012 0.035 0.123 0.003 0.001 0.048 0.683 52 V 0.020 0.009 0.001 0.174 0.038 0.033 0.130 0.005 0.001 0.069 0.520 53 K 0.012 0.002 0.001 0.667 0.028 0.041 0.050 0.001 0.001 0.042 0.158 54 I 0.008 0.002 0.001 0.286 0.045 0.074 0.072 0.001 0.001 0.049 0.463 55 I 0.002 0.001 0.001 0.422 0.031 0.053 0.101 0.003 0.001 0.016 0.368 56 D 0.633 0.022 0.006 0.063 0.009 0.012 0.039 0.011 0.006 0.042 0.156 57 P 0.235 0.019 0.007 0.051 0.002 0.006 0.070 0.005 0.003 0.091 0.511 58 E 0.035 0.009 0.001 0.016 0.003 0.012 0.088 0.002 0.001 0.016 0.817 59 G 0.113 0.043 0.003 0.030 0.032 0.050 0.096 0.007 0.001 0.052 0.574 60 N 0.080 0.007 0.001 0.010 0.080 0.051 0.130 0.004 0.001 0.051 0.586 61 D 0.008 0.005 0.001 0.014 0.060 0.080 0.105 0.002 0.001 0.014 0.712 62 V 0.015 0.041 0.002 0.015 0.032 0.030 0.118 0.002 0.001 0.014 0.731 63 T 0.071 0.445 0.002 0.008 0.040 0.027 0.075 0.034 0.001 0.035 0.263 64 P 0.052 0.841 0.001 0.002 0.001 0.002 0.010 0.003 0.001 0.007 0.080 65 E 0.026 0.832 0.003 0.007 0.005 0.008 0.013 0.003 0.001 0.020 0.082 66 K 0.005 0.916 0.002 0.003 0.004 0.004 0.008 0.001 0.001 0.011 0.046 67 L 0.013 0.942 0.002 0.001 0.003 0.002 0.004 0.006 0.001 0.003 0.022 68 K 0.030 0.852 0.001 0.005 0.004 0.004 0.007 0.006 0.001 0.039 0.052 69 R 0.025 0.548 0.015 0.008 0.005 0.008 0.028 0.005 0.006 0.188 0.163 70 E 0.086 0.333 0.097 0.011 0.005 0.011 0.035 0.015 0.027 0.238 0.143 71 Q 0.199 0.075 0.106 0.009 0.007 0.014 0.056 0.022 0.063 0.151 0.298 72 R 0.234 0.025 0.004 0.006 0.005 0.008 0.053 0.005 0.003 0.031 0.626 73 N 0.055 0.008 0.001 0.006 0.002 0.005 0.064 0.002 0.001 0.019 0.839 74 N 0.018 0.001 0.001 0.007 0.005 0.012 0.126 0.005 0.001 0.027 0.797 75 K 0.030 0.003 0.001 0.018 0.006 0.013 0.105 0.002 0.001 0.028 0.794 76 L 0.021 0.003 0.001 0.023 0.015 0.020 0.115 0.003 0.001 0.025 0.775 77 H 0.075 0.012 0.001 0.040 0.017 0.025 0.132 0.006 0.001 0.044 0.647