# TARGET T0335 # Using neural net dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-n_notor2-from-empty.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 n_notor2 ) # The input amino acid frequencies were determined from # alignment T0335.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 8.88122 # Pos AA G H I P A B S F J M N 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.202 0.127 0.017 0.015 0.010 0.014 0.041 0.009 0.001 0.004 0.561 2 I 0.115 0.117 0.023 0.024 0.024 0.034 0.150 0.007 0.001 0.008 0.498 3 S 0.061 0.080 0.007 0.011 0.010 0.016 0.199 0.004 0.001 0.004 0.607 4 N 0.037 0.140 0.003 0.011 0.005 0.007 0.095 0.003 0.001 0.004 0.696 5 A 0.039 0.159 0.003 0.004 0.003 0.006 0.329 0.002 0.001 0.011 0.444 6 K 0.062 0.424 0.003 0.005 0.007 0.013 0.316 0.008 0.001 0.013 0.149 7 I 0.044 0.899 0.003 0.002 0.001 0.003 0.008 0.002 0.001 0.001 0.036 8 A 0.008 0.945 0.001 0.001 0.001 0.002 0.004 0.003 0.001 0.001 0.036 9 R 0.079 0.785 0.001 0.001 0.001 0.001 0.003 0.027 0.001 0.001 0.103 10 I 0.057 0.908 0.016 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.014 11 N 0.002 0.928 0.001 0.001 0.001 0.001 0.007 0.006 0.001 0.001 0.054 12 E 0.012 0.863 0.001 0.001 0.001 0.001 0.017 0.004 0.001 0.001 0.103 13 L 0.008 0.965 0.001 0.001 0.001 0.001 0.007 0.002 0.001 0.001 0.016 14 A 0.020 0.944 0.001 0.001 0.001 0.001 0.011 0.010 0.001 0.001 0.012 15 A 0.016 0.968 0.003 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.010 16 K 0.012 0.966 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.001 0.016 17 A 0.030 0.941 0.001 0.001 0.001 0.001 0.001 0.015 0.001 0.001 0.012 18 K 0.077 0.738 0.009 0.001 0.001 0.002 0.002 0.098 0.001 0.001 0.071 19 A 0.123 0.642 0.063 0.007 0.002 0.005 0.008 0.052 0.001 0.001 0.097 20 G 0.233 0.264 0.021 0.025 0.007 0.008 0.035 0.096 0.001 0.002 0.309 21 V 0.349 0.074 0.185 0.026 0.003 0.004 0.037 0.013 0.001 0.004 0.306 22 I 0.058 0.045 0.111 0.173 0.015 0.022 0.105 0.007 0.001 0.003 0.461 23 T 0.033 0.017 0.003 0.065 0.005 0.009 0.373 0.002 0.001 0.003 0.491 24 E 0.004 0.008 0.001 0.005 0.001 0.001 0.034 0.001 0.001 0.001 0.948 25 E 0.003 0.029 0.001 0.004 0.001 0.003 0.596 0.001 0.001 0.005 0.358 26 E 0.023 0.037 0.001 0.002 0.001 0.004 0.863 0.002 0.001 0.017 0.051 27 K 0.047 0.900 0.001 0.001 0.001 0.001 0.006 0.001 0.001 0.001 0.044 28 A 0.005 0.978 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.017 29 E 0.008 0.959 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.030 30 Q 0.037 0.942 0.001 0.001 0.001 0.001 0.001 0.009 0.001 0.001 0.011 31 Q 0.007 0.982 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.007 32 K 0.006 0.965 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.025 33 L 0.014 0.960 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.022 34 R 0.012 0.971 0.002 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.011 35 Q 0.010 0.972 0.002 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.012 36 E 0.017 0.941 0.001 0.001 0.001 0.001 0.001 0.009 0.001 0.001 0.033 37 Y 0.024 0.954 0.001 0.001 0.001 0.001 0.001 0.007 0.001 0.001 0.014 38 L 0.013 0.958 0.005 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.016 39 K 0.012 0.937 0.003 0.001 0.001 0.001 0.003 0.008 0.001 0.001 0.034 40 G 0.066 0.814 0.003 0.001 0.001 0.001 0.003 0.011 0.001 0.001 0.100 41 F 0.087 0.841 0.009 0.001 0.001 0.001 0.005 0.008 0.001 0.001 0.046 42 R 0.026 0.832 0.016 0.007 0.002 0.006 0.014 0.012 0.001 0.001 0.085 43 S 0.032 0.642 0.006 0.004 0.003 0.004 0.016 0.013 0.001 0.001 0.280 44 S 0.132 0.663 0.004 0.001 0.001 0.001 0.017 0.006 0.001 0.001 0.174 45 M 0.051 0.817 0.006 0.002 0.002 0.003 0.018 0.008 0.001 0.001 0.091 46 K 0.033 0.791 0.008 0.004 0.005 0.009 0.019 0.009 0.001 0.002 0.120 47 N 0.079 0.687 0.005 0.002 0.006 0.011 0.038 0.015 0.001 0.003 0.154 48 T 0.170 0.667 0.004 0.003 0.006 0.004 0.007 0.025 0.001 0.001 0.113 49 L 0.098 0.747 0.012 0.006 0.010 0.012 0.012 0.022 0.001 0.003 0.078 50 K 0.074 0.440 0.022 0.015 0.039 0.055 0.041 0.047 0.001 0.005 0.262 51 S 0.271 0.148 0.024 0.032 0.039 0.075 0.031 0.083 0.001 0.007 0.289 52 V 0.342 0.050 0.091 0.148 0.105 0.075 0.030 0.024 0.001 0.006 0.128 53 K 0.028 0.008 0.050 0.225 0.188 0.168 0.091 0.005 0.001 0.003 0.233 54 I 0.003 0.001 0.011 0.165 0.294 0.318 0.021 0.001 0.001 0.001 0.186 55 I 0.002 0.001 0.001 0.294 0.186 0.364 0.044 0.001 0.001 0.001 0.106 56 D 0.009 0.001 0.001 0.163 0.253 0.214 0.120 0.001 0.001 0.003 0.236 57 P 0.001 0.001 0.001 0.024 0.008 0.010 0.021 0.001 0.001 0.001 0.935 58 E 0.001 0.001 0.001 0.015 0.009 0.022 0.731 0.001 0.001 0.010 0.212 59 G 0.694 0.001 0.001 0.011 0.002 0.002 0.073 0.001 0.001 0.141 0.076 60 N 0.395 0.024 0.003 0.012 0.004 0.004 0.354 0.001 0.001 0.029 0.174 61 D 0.126 0.009 0.010 0.017 0.006 0.011 0.349 0.001 0.001 0.014 0.456 62 V 0.168 0.017 0.026 0.061 0.024 0.067 0.178 0.001 0.001 0.014 0.444 63 T 0.018 0.007 0.002 0.015 0.049 0.064 0.562 0.001 0.001 0.002 0.280 64 P 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.996 65 E 0.001 0.004 0.001 0.004 0.005 0.015 0.539 0.001 0.001 0.003 0.429 66 K 0.111 0.021 0.001 0.004 0.002 0.008 0.617 0.001 0.001 0.023 0.214 67 L 0.074 0.846 0.001 0.008 0.001 0.002 0.005 0.001 0.001 0.001 0.062 68 K 0.024 0.913 0.001 0.002 0.001 0.002 0.003 0.001 0.001 0.001 0.054 69 R 0.038 0.884 0.001 0.001 0.001 0.001 0.002 0.002 0.001 0.001 0.073 70 E 0.038 0.898 0.001 0.001 0.001 0.001 0.001 0.009 0.001 0.001 0.054 71 Q 0.037 0.926 0.002 0.001 0.001 0.001 0.002 0.012 0.001 0.001 0.020 72 R 0.036 0.872 0.010 0.001 0.001 0.003 0.004 0.006 0.001 0.001 0.066 73 N 0.053 0.829 0.005 0.002 0.002 0.005 0.006 0.023 0.001 0.001 0.076 74 N 0.215 0.529 0.008 0.004 0.003 0.003 0.009 0.036 0.001 0.001 0.194 75 K 0.263 0.247 0.052 0.008 0.007 0.006 0.044 0.041 0.001 0.005 0.328 76 L 0.122 0.132 0.239 0.028 0.016 0.023 0.065 0.011 0.001 0.005 0.359 77 H 0.032 0.055 0.014 0.082 0.043 0.057 0.138 0.006 0.001 0.003 0.571