# TARGET T0335 # Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0335.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 54 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.001 0.001 0.001 0.001 0.001 0.998 2 I 0.004 0.024 0.004 0.041 0.003 0.015 0.908 3 S 0.001 0.002 0.003 0.121 0.059 0.013 0.802 4 N 0.001 0.001 0.008 0.946 0.008 0.021 0.016 5 A 0.001 0.001 0.005 0.959 0.010 0.017 0.009 6 K 0.001 0.001 0.001 0.988 0.002 0.007 0.002 7 I 0.001 0.001 0.001 0.994 0.001 0.003 0.002 8 A 0.001 0.001 0.001 0.996 0.001 0.002 0.001 9 R 0.001 0.001 0.001 0.996 0.001 0.003 0.001 10 I 0.001 0.001 0.001 0.998 0.001 0.001 0.001 11 N 0.001 0.001 0.001 0.993 0.001 0.006 0.001 12 E 0.001 0.001 0.001 0.984 0.001 0.014 0.001 13 L 0.001 0.001 0.001 0.981 0.002 0.014 0.003 14 A 0.001 0.001 0.001 0.968 0.003 0.024 0.005 15 A 0.001 0.001 0.001 0.937 0.011 0.029 0.021 16 K 0.001 0.001 0.003 0.932 0.022 0.017 0.025 17 A 0.001 0.001 0.004 0.923 0.020 0.029 0.022 18 K 0.001 0.001 0.010 0.857 0.019 0.080 0.033 19 A 0.001 0.002 0.016 0.625 0.049 0.266 0.042 20 G 0.001 0.001 0.009 0.099 0.071 0.766 0.054 21 V 0.001 0.004 0.006 0.017 0.020 0.621 0.333 22 I 0.001 0.001 0.001 0.001 0.006 0.001 0.993 23 T 0.001 0.001 0.001 0.002 0.005 0.001 0.991 24 E 0.001 0.001 0.012 0.939 0.013 0.021 0.014 25 E 0.001 0.001 0.009 0.968 0.002 0.014 0.007 26 E 0.001 0.001 0.004 0.957 0.001 0.003 0.034 27 K 0.001 0.001 0.001 0.994 0.001 0.002 0.003 28 A 0.001 0.001 0.001 0.980 0.004 0.009 0.006 29 E 0.001 0.001 0.001 0.976 0.001 0.019 0.003 30 Q 0.001 0.001 0.001 0.982 0.004 0.008 0.006 31 Q 0.001 0.001 0.001 0.989 0.002 0.007 0.002 32 K 0.001 0.001 0.001 0.984 0.002 0.012 0.002 33 L 0.001 0.001 0.001 0.987 0.002 0.007 0.004 34 R 0.001 0.001 0.001 0.993 0.001 0.004 0.002 35 Q 0.001 0.001 0.001 0.994 0.001 0.003 0.001 36 E 0.001 0.001 0.001 0.994 0.001 0.005 0.001 37 Y 0.001 0.001 0.001 0.992 0.001 0.007 0.001 38 L 0.001 0.001 0.001 0.993 0.001 0.005 0.001 39 K 0.001 0.001 0.001 0.989 0.001 0.009 0.001 40 G 0.001 0.001 0.001 0.983 0.001 0.015 0.001 41 F 0.001 0.001 0.001 0.988 0.001 0.007 0.002 42 R 0.001 0.001 0.002 0.991 0.001 0.005 0.001 43 S 0.001 0.001 0.003 0.980 0.001 0.015 0.001 44 S 0.001 0.001 0.005 0.944 0.001 0.049 0.001 45 M 0.002 0.002 0.007 0.946 0.006 0.030 0.007 46 K 0.004 0.001 0.052 0.899 0.005 0.030 0.009 47 N 0.013 0.001 0.072 0.776 0.017 0.108 0.014 48 T 0.015 0.005 0.129 0.601 0.014 0.210 0.027 49 L 0.104 0.030 0.063 0.230 0.162 0.195 0.216 50 K 0.097 0.002 0.049 0.058 0.194 0.458 0.141 51 S 0.269 0.001 0.017 0.009 0.159 0.466 0.079 52 V 0.758 0.002 0.001 0.002 0.021 0.008 0.207 53 K 0.935 0.006 0.001 0.001 0.006 0.001 0.053 54 I 0.907 0.002 0.001 0.001 0.008 0.001 0.081 55 I 0.842 0.023 0.001 0.001 0.019 0.003 0.111 56 D 0.235 0.010 0.004 0.001 0.020 0.007 0.723 57 P 0.008 0.001 0.017 0.001 0.049 0.898 0.027 58 E 0.002 0.001 0.013 0.001 0.046 0.925 0.012 59 G 0.016 0.005 0.020 0.003 0.514 0.210 0.231 60 N 0.033 0.012 0.007 0.003 0.349 0.108 0.487 61 D 0.148 0.137 0.008 0.003 0.249 0.063 0.391 62 V 0.136 0.115 0.003 0.003 0.157 0.011 0.575 63 T 0.032 0.008 0.001 0.003 0.096 0.004 0.857 64 P 0.002 0.002 0.040 0.790 0.047 0.048 0.071 65 E 0.001 0.001 0.026 0.942 0.008 0.017 0.006 66 K 0.001 0.001 0.018 0.962 0.004 0.009 0.006 67 L 0.001 0.001 0.005 0.976 0.002 0.006 0.011 68 K 0.001 0.001 0.003 0.975 0.003 0.012 0.006 69 R 0.001 0.001 0.001 0.969 0.003 0.019 0.006 70 E 0.001 0.001 0.001 0.962 0.009 0.013 0.014 71 Q 0.001 0.001 0.003 0.946 0.013 0.013 0.024 72 R 0.001 0.001 0.007 0.928 0.010 0.035 0.019 73 N 0.001 0.001 0.008 0.832 0.012 0.131 0.016 74 N 0.001 0.001 0.006 0.422 0.028 0.520 0.022 75 K 0.001 0.004 0.009 0.186 0.094 0.543 0.163 76 L 0.001 0.008 0.008 0.042 0.015 0.065 0.860 77 H 0.001 0.001 0.001 0.001 0.001 0.001 0.998