# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ap4 89 1.44e-01 1ncx a.39.1.5 17253 1jmtA 104 1.96e+00 d.58.7.3 63180 1zac 90 3.15e+00 1ncx a.39.1.5 17236 1qo7A 394 3.58e+00 1qo7A c.69.1.11 34697 1p9yA 121 4.02e+00 d.241.2.1 94402 1wdtA 665 4.24e+00 1vdlA 80 5.30e+00 a.5.2.1 108528 1avsA 90 5.54e+00 1cll a.39.1.5 17226 1y96B 85 6.17e+00 1t3wA 148 6.44e+00 2vsgA 358 7.11e+00 2vsgA h.4.1.1 45780 1bfmA 69 7.38e+00 1a7w a.22.1.2 16479 2cruA 118 8.17e+00 1a7w 69 8.22e+00 1a7w a.22.1.2 16477 1cpq 129 8.63e+00 1cpq a.24.3.2 16556 1grj 158 9.14e+00 1grj a.2.1.1,d.26.1.2 15691,38433 1b67A 68 9.22e+00 1a7w a.22.1.2 16474 2chgA 226 1.06e+01 1uedA 406 1.06e+01 a.104.1.1 99256 1y14B 171 1.06e+01 1iqpA 327 1.09e+01 a.80.1.1,c.37.1.20 62649,62650 1mvwC 147 1.09e+01 i.15.1.1 79525 1o1fC 147 1.09e+01 i.15.1.1 80997 1hta 69 1.12e+01 1a7w a.22.1.2 16476 1eco 136 1.29e+01 1flp a.1.1.2 15208 1doi 128 1.30e+01 1awd d.15.4.1 37676 1ecd 136 1.30e+01 1flp a.1.1.2 15211 1y7qA 98 1.32e+01 1j1jA 240 1.33e+01 a.118.16.1 90762 1i6zA 135 1.33e+01 a.7.7.1 61861 2aw4Q 117 1.33e+01 1yzyA 413 1.37e+01 1xhdA 173 1.38e+01 2amyA 246 1.47e+01 2aqaA 63 1.53e+01 2ghjA 118 1.54e+01 1icxA 155 1.58e+01 d.129.3.1 71191 1b73A 254 1.83e+01 1b74A c.78.2.1,c.78.2.1 35266,35267 1zroA 602 1.84e+01 1aikC 36 1.90e+01 2sivB 1wmhA 89 1.91e+01 1top 162 1.94e+01 1ncx a.39.1.5 17223 1aoiB 87 2.04e+01 1aoiB a.22.1.1 16470 2beqD 48 2.07e+01 1eca 136 2.10e+01 1flp a.1.1.2 15209 1ofcX 304 2.12e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1a2xA 159 2.25e+01 1ncx a.39.1.5 17251 1exnA 290 2.33e+01 1exnA a.60.7.1,c.120.1.2 18088,33358 1ylxA 103 2.36e+01 2fji1 399 2.40e+01 1g4yR 148 2.42e+01 1cll a.39.1.5 60252 1do0A 442 2.43e+01 1do0A c.37.1.20 32432 1vd2A 89 2.47e+01 d.15.2.2 108517 2aobA 99 2.47e+01 1aoiF 87 2.62e+01 1aoiB a.22.1.1 16471 1qghA 156 2.62e+01 1qghA a.25.1.1 16728 1ut8A 291 2.65e+01 a.60.7.1,c.120.1.2 99908,99909 1b74A 254 2.75e+01 1b74A c.78.2.1,c.78.2.1 35264,35265 1hq3D 103 2.82e+01 1aoiB a.22.1.1 16464 1aj4 161 2.89e+01 1ncx a.39.1.5 17244 1br1B 150 2.95e+01 1wdcC a.39.1.5 17309 1ncx 162 3.12e+01 1ncx a.39.1.5 17222 1hfeS 123 3.15e+01 1hfeS a.137.4.1 19640 1e08D 88 3.15e+01 i.4.1.1 45915 1tzyD 103 3.21e+01 a.22.1.1 107533 1cll 148 3.21e+01 1cll a.39.1.5 17263 1id3B 102 3.22e+01 a.22.1.1 66113 1fjgL 135 3.22e+01 1fjfL b.40.4.5 25346 1ic8A 194 3.30e+01 a.4.1.1,a.35.1.1 76740,76741 1iwmA 186 3.38e+01 b.125.1.2 83758 1qczA 169 3.39e+01 1qczA c.23.8.1 31276 1fosF 57 3.40e+01 h.1.3.1 45538 1bg1A 722 3.40e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 1itf 165 3.43e+01 1b5l a.26.1.3 16899 1pi2 63 3.55e+01 1pi2 g.3.13.1 44342 1xouA 192 3.57e+01 1wgmA 98 3.62e+01 2mysC 149 3.70e+01 1wdcC a.39.1.5 17323 1exnB 290 3.77e+01 1exnA a.60.7.1,c.120.1.2 18089,33359 1ak8 76 3.84e+01 1cll a.39.1.5 17281 1dvoA 152 3.89e+01 1dvoA a.136.1.1 19623 1ybxA 143 3.96e+01 2c5kT 95 3.98e+01 1v9jA 113 4.06e+01 d.52.6.1 100542 1s69A 124 4.13e+01 a.1.1.1 105305 1a0eA 443 4.19e+01 1a0cA c.1.15.3 29537 1rpo 65 4.21e+01 1nkd a.30.1.1 16975 2aukA 190 4.30e+01 1xnpA 202 4.34e+01 1nu7D 282 4.37e+01 a.8.6.1,a.8.6.1 92191,92192 1keyA 235 4.42e+01 a.118.16.1 72389 1b0zA 445 4.57e+01 2pgi c.80.1.2 35309 2pgi 445 4.57e+01 2pgi c.80.1.2 35308 2cq2A 114 4.61e+01 1zs4A 83 4.61e+01 1xzoA 174 4.67e+01 1sseB 86 4.72e+01 1xfxO 149 4.87e+01 1dp3A 55 4.92e+01 1dp3A a.55.1.2 59128 1k2fA 190 4.99e+01 b.8.1.2 68054 1n1jA 93 5.14e+01 a.22.1.3 79813 1ddmA 135 5.22e+01 2nmbA b.55.1.2 26993 1cxpA 104 5.23e+01 1d2vA a.93.1.2 18695 1d2vA 104 5.23e+01 1d2vA a.93.1.2 18697 2a2fX 325 5.25e+01 3cln 148 5.27e+01 1cll a.39.1.5 17286 1cxc 124 5.32e+01 1ycc a.3.1.1 15890 1mhlA 108 5.33e+01 1d2vA a.93.1.2 18699 1mypA 108 5.33e+01 1d2vA a.93.1.2 18701 1mypB 108 5.33e+01 1mypB a.93.1.2 18702 1uilA 113 5.38e+01 1t95A 240 5.38e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1nkd 65 5.41e+01 1nkd a.30.1.1 16974 2cxbA 124 5.49e+01 1ycc a.3.1.1 15891 2f6hX 419 5.58e+01 1kjyB 36 5.71e+01 1ji6A 589 5.72e+01 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1yfbA 59 5.76e+01 1jnmA 62 5.76e+01 h.1.3.1 84181 1zkkA 167 6.07e+01 1qspA 165 6.17e+01 1qspA a.24.10.2 16639 1ihp 438 6.19e+01 1ihp c.60.1.2 33993 1d7uA 433 6.20e+01 2dkb c.67.1.4 34439 1tn4 159 6.30e+01 1ncx a.39.1.5 17248 1fp2A 352 6.32e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 2dfkA 402 6.39e+01 1uslA 170 6.39e+01 c.121.1.1 99871 1dw9A 156 6.51e+01 1dw9A a.35.1.4,d.72.1.1 17065,39596 1tgrA 52 6.64e+01 1htmB 138 6.75e+01 1htmB h.3.1.1 45677 1i16 130 6.78e+01 1i16 b.36.1.2 24787 1umwA 237 6.81e+01 d.223.1.2,d.223.1.2 99631,99632 1a02J 56 6.81e+01 1a02J h.1.3.1 45537 1xhnA 184 6.91e+01 2fexA 188 6.92e+01 1dwkA 156 7.01e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606 2f23A 156 7.14e+01 2gnpA 266 7.14e+01 1c7qA 445 7.14e+01 2pgi c.80.1.2 35307 1ebdA 455 7.22e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 1wrjA 156 7.32e+01 1pi1A 185 7.36e+01 a.29.7.1 94699 1cm9A 74 7.39e+01 1b3aA d.9.1.1 37405 1c02A 166 7.65e+01 1qspA a.24.10.2 16633 1n0qA 93 7.70e+01 k.37.1.1 79754 1p9qC 256 7.81e+01 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 1zbdB 134 7.91e+01 1zbdB g.50.1.1 45359 1yruB 74 7.91e+01 2ahqA 76 7.93e+01 1zrjA 50 8.05e+01 2ahjA 206 8.06e+01 2ahjA d.149.1.1 41772 2ap3A 199 8.16e+01 1b1yA 500 8.17e+01 1byb c.1.8.1 28796 1reqB 637 8.18e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1bccD 241 8.27e+01 1be3D a.3.1.3,f.23.11.1 15959,43698 2fueA 262 8.39e+01 1reqD 637 8.51e+01 1reqB c.1.19.1,c.23.6.1 29623,31250 1u4nA 310 8.55e+01 1sgoA 139 8.56e+01 d.82.3.1 98857 1uehA 253 8.76e+01 c.101.1.1 99259 1oe4A 247 8.82e+01 c.18.1.3 86895 6prcH 258 8.95e+01 6prcH b.41.1.1,f.23.10.1 25457,43436