Best Alignments for T0335

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1t3wA/T0335-1t3wA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t3wA/T0335-1t3wA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1529e+008.24e-03
1y96B/T0335-1y96B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y96B/T0335-1y96B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1600e+001.04e+00
1t95A/T0335-1t95A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t95A/T0335-1t95A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1865e+003.42e-13 a.5.8.1
d.235.1.2
d.58.11.3
1lj9A/T0335-1lj9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1lj9A/T0335-1lj9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5022e+002.05e-05 a.4.5.28
1xhdA/T0335-1xhdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xhdA/T0335-1xhdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5980e+002.11e-05
2au5A/T0335-2au5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2au5A/T0335-2au5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7023e+006.74e-07
1wdtA/T0335-1wdtA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wdtA/T0335-1wdtA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9963e+004.15e-05
2beqD/T0335-2beqD-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2beqD/T0335-2beqD-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.0044e+005.41e-05
2c5kT/T0335-2c5kT-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2c5kT/T0335-2c5kT-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.7405e+002.61e-01
1m1eB/T0335-1m1eB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1m1eB/T0335-1m1eB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1582e+001.03e-06 a.161.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001