# TARGET T0335 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0335.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 10.373 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.011 0.002 0.005 0.157 0.070 0.755 2 I 0.024 0.007 0.008 0.358 0.076 0.527 3 S 0.014 0.003 0.005 0.443 0.061 0.474 4 N 0.002 0.002 0.013 0.839 0.043 0.101 5 A 0.002 0.001 0.015 0.923 0.030 0.029 6 K 0.001 0.001 0.009 0.969 0.012 0.008 7 I 0.001 0.001 0.003 0.981 0.008 0.007 8 A 0.001 0.001 0.002 0.986 0.006 0.005 9 R 0.001 0.001 0.002 0.991 0.004 0.002 10 I 0.001 0.001 0.001 0.993 0.004 0.002 11 N 0.001 0.001 0.001 0.993 0.004 0.001 12 E 0.001 0.001 0.002 0.988 0.006 0.003 13 L 0.001 0.001 0.004 0.959 0.015 0.021 14 A 0.001 0.001 0.007 0.951 0.020 0.020 15 A 0.003 0.001 0.007 0.942 0.027 0.020 16 K 0.005 0.001 0.012 0.901 0.038 0.043 17 A 0.007 0.003 0.021 0.805 0.078 0.086 18 K 0.006 0.003 0.026 0.778 0.095 0.092 19 A 0.013 0.005 0.053 0.656 0.146 0.127 20 G 0.009 0.002 0.041 0.378 0.229 0.341 21 V 0.014 0.009 0.022 0.105 0.206 0.642 22 I 0.017 0.033 0.004 0.048 0.160 0.739 23 T 0.006 0.006 0.001 0.028 0.081 0.879 24 E 0.001 0.001 0.005 0.987 0.006 0.003 25 E 0.001 0.001 0.012 0.973 0.012 0.002 26 E 0.001 0.001 0.005 0.983 0.009 0.002 27 K 0.001 0.001 0.001 0.989 0.004 0.005 28 A 0.001 0.001 0.001 0.998 0.001 0.001 29 E 0.001 0.001 0.001 0.997 0.001 0.001 30 Q 0.001 0.001 0.001 0.998 0.001 0.001 31 Q 0.001 0.001 0.001 0.998 0.001 0.001 32 K 0.001 0.001 0.001 0.995 0.002 0.001 33 L 0.001 0.001 0.002 0.991 0.003 0.004 34 R 0.001 0.001 0.001 0.994 0.002 0.003 35 Q 0.001 0.001 0.001 0.997 0.001 0.001 36 E 0.001 0.001 0.003 0.993 0.003 0.001 37 Y 0.001 0.001 0.002 0.994 0.002 0.001 38 L 0.001 0.001 0.001 0.994 0.003 0.001 39 K 0.001 0.001 0.001 0.997 0.001 0.001 40 G 0.001 0.001 0.003 0.988 0.006 0.003 41 F 0.001 0.001 0.003 0.989 0.005 0.003 42 R 0.001 0.001 0.002 0.992 0.004 0.001 43 S 0.001 0.001 0.002 0.992 0.004 0.002 44 S 0.001 0.001 0.005 0.958 0.016 0.021 45 M 0.002 0.001 0.014 0.927 0.032 0.024 46 K 0.005 0.001 0.019 0.912 0.053 0.010 47 N 0.012 0.001 0.023 0.873 0.070 0.022 48 T 0.018 0.001 0.036 0.756 0.069 0.119 49 L 0.043 0.009 0.133 0.655 0.129 0.031 50 K 0.097 0.002 0.115 0.410 0.313 0.063 51 S 0.148 0.002 0.074 0.318 0.313 0.145 52 V 0.736 0.014 0.003 0.022 0.093 0.133 53 K 0.893 0.004 0.001 0.002 0.013 0.087 54 I 0.969 0.002 0.001 0.001 0.005 0.023 55 I 0.872 0.024 0.001 0.001 0.016 0.088 56 D 0.244 0.024 0.001 0.001 0.716 0.014 57 P 0.003 0.001 0.012 0.001 0.977 0.008 58 E 0.001 0.001 0.018 0.001 0.976 0.005 59 G 0.005 0.012 0.013 0.001 0.967 0.002 60 N 0.032 0.023 0.024 0.004 0.431 0.487 61 D 0.129 0.309 0.031 0.007 0.287 0.237 62 V 0.105 0.083 0.015 0.012 0.347 0.438 63 T 0.041 0.015 0.002 0.018 0.129 0.795 64 P 0.001 0.001 0.021 0.925 0.030 0.022 65 E 0.001 0.001 0.014 0.976 0.008 0.002 66 K 0.002 0.001 0.023 0.959 0.013 0.002 67 L 0.008 0.002 0.009 0.958 0.013 0.009 68 K 0.005 0.002 0.004 0.973 0.008 0.009 69 R 0.004 0.001 0.005 0.963 0.011 0.016 70 E 0.003 0.001 0.006 0.936 0.023 0.033 71 Q 0.004 0.004 0.011 0.905 0.040 0.036 72 R 0.003 0.002 0.015 0.860 0.066 0.055 73 N 0.003 0.001 0.032 0.679 0.136 0.149 74 N 0.004 0.002 0.038 0.387 0.195 0.373 75 K 0.011 0.004 0.036 0.148 0.206 0.594 76 L 0.013 0.011 0.018 0.116 0.131 0.711 77 H 0.002 0.001 0.001 0.003 0.021 0.973