# TARGET T0335 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0335.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 10.373 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.008 0.801 0.001 0.005 0.120 0.001 0.001 0.001 0.028 0.023 0.004 0.009 2 I 0.001 0.014 0.682 0.001 0.008 0.214 0.001 0.001 0.002 0.033 0.029 0.007 0.010 3 S 0.001 0.004 0.395 0.001 0.012 0.462 0.001 0.001 0.001 0.061 0.051 0.004 0.008 4 N 0.001 0.001 0.064 0.001 0.013 0.852 0.001 0.001 0.001 0.031 0.035 0.001 0.002 5 A 0.001 0.001 0.032 0.001 0.009 0.921 0.001 0.001 0.001 0.014 0.019 0.001 0.001 6 K 0.001 0.001 0.023 0.001 0.007 0.946 0.001 0.001 0.001 0.006 0.013 0.001 0.002 7 I 0.001 0.001 0.022 0.001 0.003 0.960 0.001 0.001 0.001 0.005 0.006 0.001 0.002 8 A 0.001 0.001 0.009 0.001 0.002 0.975 0.001 0.001 0.001 0.004 0.008 0.001 0.001 9 R 0.001 0.001 0.005 0.001 0.001 0.980 0.001 0.001 0.001 0.003 0.010 0.001 0.001 10 I 0.001 0.001 0.005 0.001 0.001 0.984 0.001 0.001 0.001 0.002 0.007 0.001 0.001 11 N 0.001 0.001 0.005 0.001 0.001 0.984 0.001 0.001 0.001 0.004 0.006 0.001 0.001 12 E 0.001 0.001 0.003 0.001 0.001 0.988 0.001 0.001 0.001 0.001 0.007 0.001 0.001 13 L 0.001 0.001 0.004 0.001 0.001 0.984 0.001 0.001 0.001 0.001 0.010 0.001 0.001 14 A 0.001 0.001 0.007 0.001 0.001 0.973 0.001 0.001 0.001 0.004 0.014 0.001 0.001 15 A 0.001 0.001 0.008 0.001 0.003 0.962 0.001 0.001 0.001 0.003 0.022 0.001 0.001 16 K 0.001 0.001 0.010 0.001 0.006 0.931 0.001 0.001 0.001 0.006 0.045 0.001 0.001 17 A 0.001 0.001 0.030 0.001 0.010 0.871 0.001 0.001 0.001 0.014 0.073 0.001 0.001 18 K 0.001 0.003 0.037 0.001 0.015 0.847 0.001 0.001 0.001 0.018 0.077 0.001 0.001 19 A 0.001 0.004 0.076 0.001 0.019 0.615 0.001 0.001 0.001 0.041 0.241 0.001 0.002 20 G 0.001 0.001 0.080 0.001 0.014 0.121 0.001 0.001 0.001 0.175 0.605 0.001 0.001 21 V 0.001 0.011 0.698 0.001 0.005 0.029 0.001 0.001 0.004 0.118 0.124 0.002 0.008 22 I 0.001 0.051 0.832 0.001 0.001 0.006 0.001 0.001 0.005 0.088 0.007 0.006 0.004 23 T 0.001 0.008 0.916 0.001 0.001 0.017 0.001 0.001 0.002 0.049 0.001 0.001 0.006 24 E 0.001 0.001 0.003 0.001 0.006 0.976 0.001 0.001 0.001 0.003 0.012 0.001 0.001 25 E 0.001 0.001 0.002 0.001 0.010 0.973 0.001 0.001 0.001 0.001 0.013 0.001 0.001 26 E 0.001 0.001 0.004 0.001 0.006 0.985 0.001 0.001 0.001 0.002 0.003 0.001 0.001 27 K 0.001 0.001 0.002 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 A 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 E 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 30 Q 0.001 0.001 0.003 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.002 0.001 0.001 31 Q 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 32 K 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 33 L 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 34 R 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 35 Q 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.002 0.001 0.001 36 E 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.005 0.001 0.001 37 Y 0.001 0.001 0.001 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.008 0.001 0.001 38 L 0.001 0.001 0.001 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.007 0.001 0.001 39 K 0.001 0.001 0.001 0.001 0.002 0.984 0.001 0.001 0.001 0.001 0.012 0.001 0.001 40 G 0.001 0.001 0.001 0.001 0.004 0.964 0.001 0.001 0.001 0.001 0.029 0.001 0.001 41 F 0.001 0.001 0.006 0.001 0.009 0.958 0.001 0.001 0.001 0.005 0.022 0.001 0.001 42 R 0.001 0.001 0.009 0.001 0.006 0.959 0.001 0.001 0.001 0.007 0.017 0.001 0.001 43 S 0.001 0.001 0.003 0.001 0.006 0.964 0.001 0.001 0.001 0.003 0.023 0.001 0.001 44 S 0.001 0.001 0.004 0.001 0.004 0.972 0.001 0.001 0.001 0.002 0.018 0.001 0.001 45 M 0.001 0.001 0.006 0.001 0.005 0.975 0.001 0.001 0.001 0.003 0.011 0.001 0.001 46 K 0.001 0.001 0.008 0.001 0.013 0.949 0.001 0.001 0.001 0.006 0.022 0.001 0.001 47 N 0.001 0.001 0.007 0.001 0.017 0.900 0.001 0.001 0.001 0.007 0.064 0.002 0.001 48 T 0.001 0.001 0.025 0.001 0.032 0.830 0.001 0.001 0.001 0.013 0.095 0.001 0.002 49 L 0.001 0.008 0.126 0.001 0.068 0.657 0.001 0.001 0.014 0.036 0.072 0.003 0.013 50 K 0.001 0.005 0.084 0.148 0.117 0.234 0.001 0.001 0.008 0.083 0.300 0.012 0.007 51 S 0.003 0.002 0.079 0.024 0.171 0.100 0.001 0.001 0.020 0.102 0.442 0.013 0.040 52 V 0.018 0.003 0.384 0.010 0.055 0.047 0.009 0.008 0.139 0.082 0.027 0.029 0.190 53 K 0.041 0.011 0.075 0.003 0.004 0.021 0.022 0.019 0.407 0.030 0.007 0.290 0.071 54 I 0.096 0.016 0.059 0.001 0.001 0.009 0.055 0.015 0.263 0.008 0.001 0.029 0.448 55 I 0.131 0.249 0.126 0.007 0.001 0.006 0.058 0.007 0.134 0.015 0.001 0.147 0.118 56 D 0.001 0.011 0.914 0.001 0.001 0.001 0.001 0.001 0.008 0.020 0.001 0.003 0.042 57 P 0.001 0.001 0.010 0.001 0.020 0.008 0.001 0.001 0.001 0.016 0.945 0.001 0.001 58 E 0.001 0.001 0.017 0.001 0.026 0.005 0.001 0.001 0.001 0.050 0.901 0.001 0.001 59 G 0.001 0.003 0.218 0.001 0.015 0.005 0.001 0.001 0.001 0.687 0.068 0.001 0.001 60 N 0.001 0.047 0.552 0.001 0.007 0.011 0.001 0.001 0.002 0.267 0.085 0.002 0.025 61 D 0.003 0.346 0.355 0.003 0.004 0.007 0.001 0.001 0.003 0.140 0.035 0.011 0.094 62 V 0.002 0.247 0.560 0.002 0.003 0.007 0.001 0.001 0.002 0.085 0.010 0.045 0.035 63 T 0.001 0.019 0.864 0.001 0.001 0.008 0.001 0.001 0.001 0.047 0.001 0.003 0.055 64 P 0.001 0.001 0.007 0.001 0.021 0.947 0.001 0.001 0.001 0.004 0.020 0.001 0.001 65 E 0.001 0.001 0.001 0.001 0.013 0.974 0.001 0.001 0.001 0.001 0.011 0.001 0.001 66 K 0.001 0.001 0.002 0.001 0.016 0.972 0.001 0.001 0.001 0.001 0.008 0.001 0.001 67 L 0.001 0.001 0.010 0.001 0.004 0.976 0.001 0.001 0.001 0.002 0.006 0.001 0.001 68 K 0.001 0.001 0.015 0.001 0.004 0.963 0.001 0.001 0.001 0.003 0.013 0.001 0.001 69 R 0.001 0.001 0.012 0.001 0.005 0.946 0.001 0.001 0.001 0.007 0.026 0.001 0.002 70 E 0.001 0.001 0.035 0.001 0.005 0.914 0.001 0.001 0.001 0.012 0.031 0.001 0.001 71 Q 0.001 0.003 0.064 0.001 0.013 0.865 0.001 0.001 0.001 0.015 0.037 0.001 0.002 72 R 0.001 0.002 0.050 0.001 0.015 0.817 0.001 0.001 0.001 0.022 0.088 0.002 0.003 73 N 0.001 0.002 0.065 0.001 0.025 0.612 0.001 0.001 0.001 0.036 0.252 0.002 0.004 74 N 0.001 0.003 0.204 0.001 0.023 0.362 0.001 0.001 0.001 0.191 0.206 0.003 0.005 75 K 0.001 0.010 0.371 0.001 0.028 0.256 0.001 0.001 0.002 0.137 0.177 0.007 0.011 76 L 0.001 0.020 0.641 0.001 0.016 0.121 0.001 0.001 0.003 0.098 0.079 0.003 0.017 77 H 0.001 0.003 0.955 0.001 0.002 0.007 0.001 0.001 0.001 0.021 0.004 0.003 0.003