# TARGET T0335 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0335.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 10.373 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.431 0.151 0.170 0.104 0.052 0.022 0.030 0.014 0.016 0.009 0.001 2 I 0.400 0.165 0.226 0.114 0.020 0.036 0.011 0.003 0.020 0.005 0.001 3 S 0.368 0.119 0.310 0.053 0.052 0.031 0.013 0.003 0.019 0.031 0.001 4 N 0.949 0.002 0.007 0.022 0.001 0.003 0.010 0.004 0.001 0.001 0.001 5 A 0.958 0.003 0.005 0.027 0.001 0.002 0.002 0.002 0.001 0.001 0.001 6 K 0.975 0.001 0.002 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 7 I 0.987 0.002 0.005 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 8 A 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 9 R 0.990 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 10 I 0.986 0.001 0.001 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 N 0.982 0.001 0.001 0.012 0.001 0.002 0.001 0.001 0.001 0.001 0.001 12 E 0.983 0.001 0.001 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 L 0.975 0.001 0.001 0.022 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 A 0.971 0.002 0.004 0.017 0.001 0.001 0.002 0.001 0.001 0.001 0.001 15 A 0.930 0.003 0.005 0.054 0.001 0.003 0.002 0.001 0.001 0.001 0.001 16 K 0.904 0.014 0.027 0.044 0.002 0.004 0.003 0.001 0.001 0.001 0.001 17 A 0.782 0.028 0.040 0.112 0.007 0.008 0.010 0.004 0.006 0.003 0.001 18 K 0.759 0.030 0.042 0.110 0.006 0.016 0.023 0.003 0.009 0.002 0.001 19 A 0.443 0.044 0.097 0.305 0.018 0.014 0.050 0.010 0.012 0.006 0.001 20 G 0.201 0.046 0.106 0.124 0.092 0.017 0.123 0.245 0.012 0.034 0.001 21 V 0.242 0.174 0.301 0.120 0.051 0.032 0.042 0.004 0.027 0.006 0.001 22 I 0.058 0.151 0.598 0.090 0.014 0.073 0.005 0.001 0.009 0.001 0.001 23 T 0.012 0.143 0.739 0.002 0.075 0.016 0.001 0.001 0.009 0.003 0.001 24 E 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 E 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 E 0.993 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 K 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 E 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 Q 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 31 Q 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 32 K 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 33 L 0.992 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 34 R 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 35 Q 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 36 E 0.994 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 37 Y 0.973 0.001 0.001 0.025 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 L 0.984 0.001 0.002 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 K 0.991 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 G 0.982 0.001 0.001 0.013 0.001 0.001 0.001 0.003 0.001 0.001 0.001 41 F 0.931 0.001 0.003 0.061 0.001 0.002 0.001 0.001 0.001 0.001 0.001 42 R 0.962 0.004 0.005 0.022 0.001 0.002 0.002 0.001 0.001 0.001 0.001 43 S 0.969 0.003 0.008 0.015 0.001 0.001 0.002 0.001 0.001 0.001 0.001 44 S 0.933 0.003 0.005 0.047 0.002 0.003 0.002 0.001 0.002 0.001 0.001 45 M 0.975 0.001 0.001 0.021 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 K 0.982 0.002 0.003 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 N 0.954 0.002 0.002 0.036 0.001 0.001 0.003 0.001 0.001 0.001 0.001 48 T 0.810 0.006 0.007 0.169 0.001 0.003 0.001 0.001 0.002 0.001 0.001 49 L 0.615 0.075 0.149 0.112 0.006 0.023 0.006 0.002 0.013 0.001 0.001 50 K 0.883 0.006 0.017 0.089 0.001 0.001 0.002 0.001 0.001 0.001 0.001 51 S 0.251 0.118 0.050 0.374 0.132 0.012 0.035 0.013 0.014 0.002 0.001 52 V 0.030 0.549 0.324 0.022 0.020 0.022 0.002 0.001 0.031 0.001 0.001 53 K 0.028 0.673 0.187 0.006 0.027 0.044 0.002 0.001 0.033 0.001 0.001 54 I 0.009 0.574 0.340 0.005 0.011 0.043 0.001 0.001 0.017 0.001 0.001 55 I 0.022 0.606 0.230 0.020 0.028 0.063 0.001 0.001 0.030 0.001 0.001 56 D 0.001 0.125 0.727 0.001 0.035 0.062 0.001 0.001 0.048 0.001 0.001 57 P 0.976 0.001 0.004 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 58 E 0.376 0.002 0.030 0.582 0.001 0.002 0.004 0.001 0.002 0.001 0.001 59 G 0.044 0.002 0.046 0.093 0.012 0.004 0.114 0.647 0.006 0.031 0.001 60 N 0.189 0.033 0.567 0.067 0.008 0.019 0.082 0.017 0.007 0.012 0.001 61 D 0.150 0.070 0.269 0.245 0.028 0.075 0.099 0.033 0.026 0.004 0.001 62 V 0.099 0.364 0.392 0.080 0.028 0.024 0.002 0.001 0.008 0.001 0.001 63 T 0.017 0.216 0.615 0.002 0.051 0.031 0.001 0.001 0.061 0.004 0.001 64 P 0.898 0.001 0.084 0.008 0.001 0.005 0.001 0.001 0.001 0.001 0.003 65 E 0.985 0.001 0.004 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 66 K 0.972 0.001 0.003 0.021 0.001 0.001 0.001 0.001 0.001 0.001 0.001 67 L 0.954 0.004 0.010 0.026 0.001 0.002 0.002 0.001 0.001 0.001 0.001 68 K 0.951 0.007 0.011 0.018 0.002 0.003 0.004 0.001 0.001 0.001 0.001 69 R 0.944 0.011 0.012 0.024 0.003 0.002 0.001 0.001 0.001 0.001 0.001 70 E 0.920 0.012 0.012 0.044 0.004 0.002 0.002 0.001 0.001 0.001 0.001 71 Q 0.826 0.021 0.020 0.105 0.004 0.008 0.005 0.002 0.008 0.001 0.001 72 R 0.795 0.031 0.043 0.072 0.008 0.012 0.022 0.004 0.007 0.006 0.001 73 N 0.643 0.025 0.041 0.185 0.011 0.026 0.046 0.006 0.011 0.005 0.001 74 N 0.337 0.064 0.091 0.387 0.022 0.026 0.049 0.006 0.016 0.001 0.001 75 K 0.303 0.067 0.117 0.172 0.027 0.035 0.228 0.019 0.027 0.005 0.001 76 L 0.291 0.168 0.236 0.188 0.019 0.051 0.017 0.004 0.024 0.003 0.001 77 H 0.190 0.198 0.225 0.115 0.077 0.052 0.065 0.013 0.047 0.018 0.001