# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2aexA 346 2.47e-01 2b1eA 564 3.26e-01 1t95A 240 3.64e-01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1y96B 85 7.84e-01 2c5kT 95 9.48e-01 1oyc 400 1.02e+00 1oyc c.1.4.1 28603 2beqD 48 1.03e+00 2h0uA 217 1.16e+00 1q74A 303 1.24e+00 c.134.1.1 96019 1wdpA 495 1.44e+00 1eca 136 1.67e+00 1flp a.1.1.2 15209 1tw9A 206 1.70e+00 a.45.1.1,c.47.1.5 107381,107382 1m1eB 81 1.79e+00 a.161.1.1 78400 2au5A 139 1.80e+00 1j93A 353 1.83e+00 c.1.22.1 66454 1lj9A 144 2.25e+00 a.4.5.28 78035 1jixA 351 2.29e+00 1c3jA c.87.1.1 63081 1t3wA 148 2.30e+00 1bbhA 131 2.91e+00 1bbhA a.24.3.2 16546 2cvhA 220 3.59e+00 2aukA 190 4.20e+00 1n4kA 381 4.24e+00 a.118.22.1,b.42.6.1 79992,79993 2etxA 209 4.57e+00 2amdA 311 4.58e+00 1omrA 201 4.77e+00 a.39.1.5 93349 1f46A 140 4.81e+00 1f46A d.129.4.1 59643 2tpsA 227 4.91e+00 2tpsA c.1.3.1 28591 1k2xB 143 5.17e+00 1yirA 408 5.24e+00 1uw4A 91 5.32e+00 d.58.7.4 100071 1o6dA 163 5.50e+00 c.116.1.3 92567 1g0cA 364 5.53e+00 7a3hA c.1.8.3 60165 1txnA 328 5.56e+00 1h6pA 203 5.61e+00 a.146.1.1 60690 1ym3A 215 5.62e+00 2fu2A 102 5.63e+00 1t5bA 201 6.26e+00 c.23.5.3 106433 1xhdA 173 6.27e+00 1upvA 257 6.44e+00 2fefA 294 6.65e+00 1grj 158 6.83e+00 1grj a.2.1.1,d.26.1.2 15691,38433 2erbA 125 6.91e+00 1tzyD 103 6.99e+00 a.22.1.1 107533 1pkhA 204 7.38e+00 b.85.4.1 94832 2af4C 333 7.67e+00 2fbhA 146 7.89e+00 1nvmA 345 8.02e+00 a.5.7.1,c.1.10.5 86249,86250 1v2zA 111 8.25e+00 a.186.1.1 108300 1keaA 221 8.46e+00 a.96.1.2 68491 1vjeA 166 8.82e+00 d.185.1.2 100807 1a7w 69 9.05e+00 1a7w a.22.1.2 16477 2gl5A 410 9.11e+00 1y791 680 9.59e+00 1tzzA 392 9.68e+00 1vflA 356 9.80e+00 1zuhA 168 9.89e+00 1wy1A 172 1.01e+01 2ck3A 510 1.02e+01 1lvfA 110 1.04e+01 a.47.2.1 74280 1dugA 234 1.05e+01 1b8xA a.45.1.1,c.47.1.5 17718,33012 1b67A 68 1.06e+01 1a7w a.22.1.2 16474 2fueA 262 1.07e+01 1avsA 90 1.07e+01 1cll a.39.1.5 17226 1qjtA 99 1.12e+01 1eh2 a.39.1.6 17335 1dekA 241 1.12e+01 1dekA c.37.1.1 31842 1ockA 412 1.15e+01 c.117.1.1 86802 1ajsA 412 1.16e+01 1ajsA c.67.1.1 34276 1kqpA 271 1.18e+01 c.26.2.1 72883 2bezF 42 1.21e+01 1r0mA 375 1.25e+01 c.1.11.2,d.54.1.1 104747,104748 1u53A 196 1.28e+01 1y9qA 192 1.31e+01 1ekqA 272 1.40e+01 1c3qA c.72.1.2 34941 2b18A 164 1.48e+01 2f6mA 65 1.50e+01 1dp3A 55 1.51e+01 1dp3A a.55.1.2 59128 1sauA 115 1.52e+01 1paqA 189 1.53e+01 a.118.1.14 94413 2fcwA 109 1.55e+01 3tmkA 216 1.58e+01 3tmkA c.37.1.1 31920 2c4jA 218 1.61e+01 1b0nA 111 1.62e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 1ovnA 248 1.65e+01 a.71.1.1,c.47.1.7 93602,93603 1wdtA 665 1.65e+01 1wa3A 205 1.66e+01 1uvqB 198 1.68e+01 b.1.1.2,d.19.1.1 100064,100065 1n3lA 372 1.70e+01 c.26.1.1 79966 1ofcX 304 1.71e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 2a6sA 84 1.74e+01 2ar0A 541 1.74e+01 1z7xW 461 1.76e+01 1jo0A 98 1.78e+01 d.68.4.1 77140 1ka1A 357 1.79e+01 e.7.1.1 68369 2fsjA 346 1.80e+01 2di4A 238 1.82e+01 1h8eA 510 1.82e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1pvmA 184 1.84e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1cvrA 435 1.86e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1wbeA 209 1.87e+01 1snnA 227 1.88e+01 d.115.1.2 105821 1z0xA 220 1.94e+01 1wkyA 464 1.96e+01 1y97A 238 1.97e+01 2fnoA 248 1.97e+01 1v1dA 31 1.97e+01 1vjvA 415 2.01e+01 d.3.1.9 108632 1vzjA 40 2.01e+01 1kn1B 161 2.05e+01 a.1.1.3 77456 1v3wA 173 2.06e+01 b.81.1.5 100291 1azo 232 2.06e+01 1azo c.52.1.14 33329 1h97A 147 2.11e+01 1h97A a.1.1.2 60812 1izmA 184 2.21e+01 a.199.1.1 90725 1sczA 233 2.23e+01 c.43.1.1 98802 1woqA 267 2.27e+01 c.55.1.10,c.55.1.10 109462,109463 1bj7 156 2.28e+01 1bj7 b.60.1.1 27113 1d4aA 273 2.29e+01 1d4aA c.23.5.3 31219 1icpA 376 2.29e+01 1oyc c.1.4.1 62270 1t0iA 191 2.34e+01 c.23.5.4 106209 1k3bB 164 2.41e+01 d.3.1.1 72015 1vbuA 328 2.42e+01 2fpqA 444 2.44e+01 1a6q 382 2.44e+01 1a6q a.159.1.1,d.219.1.1 75801,75802 1vjuA 309 2.46e+01 d.248.1.1 100835 1t7rA 269 2.57e+01 a.123.1.1 106635 1qksA 567 2.58e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 1e5pA 151 2.59e+01 1bj7 b.60.1.1 59272 1rw1A 114 2.60e+01 1h5rA 293 2.62e+01 c.68.1.6 65623 1aj8A 371 2.68e+01 1aj8A a.103.1.1 18900 2bkaA 242 2.68e+01 2db0A 253 2.71e+01 1wmaA 276 2.73e+01 1brwA 433 2.73e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1v63A 101 2.73e+01 a.21.1.1 108391 1fviA 297 2.81e+01 1fviA b.40.4.6,d.142.2.1 25364,41578 2ccjA 205 2.86e+01 2bskB 90 2.88e+01 1r2zA 274 2.93e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 2cq2A 114 2.94e+01 1auoA 218 2.97e+01 1auoA c.69.1.14 34716 1n1jA 93 2.98e+01 a.22.1.3 79813 1wmhA 89 2.99e+01 2fhfA 1083 3.02e+01 1zjcA 418 3.04e+01 1edg 380 3.06e+01 1edg c.1.8.3 28807 1j79A 347 3.08e+01 1j79A c.1.9.4 62675 1oaqH 121 3.09e+01 b.1.1.1 92707 1iuqA 367 3.12e+01 c.112.1.1 90703 1czqA 46 3.17e+01 1czqA h.3.2.1 45720 1vcsA 102 3.20e+01 1wc3A 219 3.31e+01 2gokA 429 3.35e+01 1ydmA 187 3.42e+01 1zavU 30 3.45e+01 1t3qB 788 3.48e+01 d.41.1.1,d.133.1.1 106369,106370 1idrA 136 3.48e+01 1dlyA a.1.1.1 62301 1pyfA 312 3.50e+01 c.1.7.1 95334 1fnnA 389 3.50e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1tr0A 108 3.51e+01 d.58.4.4 107261 1svy 114 3.51e+01 1svy d.109.1.1 40831 2ezvA 269 3.53e+01 1sknP 92 3.55e+01 1sknP a.37.1.1 17127 1xzoA 174 3.57e+01 1jmsA 381 3.58e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1woyA 500 3.58e+01 2c1vA 338 3.60e+01 2gsq 202 3.66e+01 1pd21 a.45.1.1,c.47.1.5 17715,33009 1nkpA 88 3.71e+01 a.38.1.1 80573 1wrdA 103 3.71e+01 1acf 125 3.74e+01 3nul d.110.1.1 40882 1kv5A 250 3.77e+01 c.1.1.1 73052 1fy7A 278 3.78e+01 1fy7A d.108.1.1 40817 1cpcB 172 3.79e+01 1qgwC a.1.1.3 15644 1q8cA 151 3.82e+01 a.79.1.2 96202 1hulA 108 3.82e+01 1hulA a.26.1.2 16865 1cpq 129 3.83e+01 1cpq a.24.3.2 16556 1yy7A 213 3.84e+01 2f2eA 146 3.86e+01 1wmiB 67 3.87e+01 2f6uA 234 3.90e+01 1uekA 275 3.95e+01 d.14.1.5,d.58.26.5 88483,88484 1y74A 57 3.96e+01 1g24A 211 4.01e+01 1g24A d.166.1.1 42270 1fr2A 86 4.05e+01 a.28.2.1 83256 1gnxA 479 4.05e+01 c.1.8.4 76241 1jboB 172 4.06e+01 a.1.1.3 84151 1z0kB 69 4.09e+01 1n83A 270 4.15e+01 a.123.1.1 80276 1g6hA 257 4.15e+01 1gajA c.37.1.12 60318 1srqA 341 4.22e+01 e.55.1.1 105967 1r2rA 248 4.24e+01 c.1.1.1 96875 1q1fA 151 4.27e+01 a.1.1.2 104476 1b0b 142 4.27e+01 2fal a.1.1.2 15010 1ir6A 424 4.27e+01 c.107.1.2 71342 1h1nA 305 4.33e+01 c.1.8.3 70855 1q2bA 434 4.35e+01 b.29.1.10 95624 2gb7A 305 4.37e+01 1kr7A 110 4.41e+01 a.1.1.4 72890 1wudA 89 4.43e+01 1useA 45 4.44e+01 2cybA 323 4.46e+01 1cmcA 104 4.46e+01 1cmbA a.43.1.5 17462 1xpcA 248 4.47e+01 2fliA 220 4.48e+01 2f9dA 125 4.52e+01 1whzA 70 4.53e+01 1eyvA 156 4.60e+01 1eyvA a.79.1.1 18446 1yzmA 51 4.60e+01 1eyhA 144 4.71e+01 1eduA a.118.9.1 19214 1iq4A 179 4.75e+01 1iq4A d.77.1.1 62641 1regX 122 4.86e+01 1regX d.58.27.1 39406 1yf3A 259 4.90e+01 2cw6A 298 4.91e+01 1sdiA 213 4.92e+01 a.198.1.1 105437 2eulA 156 4.92e+01 1jboA 162 4.96e+01 a.1.1.3 84150 1vk0A 206 5.00e+01 c.55.3.5 100839 1ef8A 261 5.00e+01 1ef8A c.14.1.3 30921 4ubpA 101 5.05e+01 1ubpA d.8.1.1 37352 2cqsA 842 5.07e+01 1uzeA 589 5.07e+01 d.92.1.5 108174 1l0bA 229 5.10e+01 c.15.1.3,c.15.1.3 73391,73392 1r9lA 309 5.17e+01 c.94.1.1 97262 1b4pA 217 5.20e+01 a.45.1.1,c.47.1.5 83158,83159 1tqnA 486 5.28e+01 a.104.1.1 107238 1wq6A 72 5.31e+01 1p65A 73 5.32e+01 d.254.1.1 94156 1iznB 277 5.34e+01 e.43.1.2 83848 1ow1A 195 5.41e+01 b.131.1.3 93625 1oq9A 363 5.42e+01 a.25.1.2 87257 1n55A 251 5.47e+01 c.1.1.1 80007 1ak0 270 5.47e+01 1ak0 a.124.1.2 19345 1rgxA 114 5.48e+01 g.77.1.1 104932 1ou8A 111 5.50e+01 b.136.1.1 93543 1ykiA 217 5.51e+01 1wwrA 171 5.59e+01 2a7oA 112 5.60e+01 1vaxA 287 5.62e+01 1n0wA 243 5.64e+01 c.37.1.11 79772 1or4A 178 5.65e+01 a.1.1.2 93447 1eumA 165 5.67e+01 1eumA a.25.1.1 59507 2basA 431 5.68e+01 1spvA 184 5.72e+01 c.50.1.2 98957 1j77A 209 5.83e+01 1j77A a.132.1.2 62674 1zbsA 291 5.96e+01 2b95A 106 5.96e+01 1nh1A 330 5.98e+01 e.45.1.1 91871 1oeyJ 107 6.00e+01 d.15.2.2 92804 1j09A 468 6.06e+01 a.97.1.1,c.26.1.1 77025,77026 2aaoA 166 6.07e+01 1ep3A 311 6.08e+01 2dorA c.1.4.1 28597 1vykA 149 6.17e+01 1dpsA 167 6.19e+01 1dpsA a.25.1.1 16716 2cbzA 237 6.21e+01 1uozA 315 6.27e+01 1yozA 116 6.30e+01 1ug6A 431 6.32e+01 c.1.8.4 88490 1kn1A 160 6.35e+01 a.1.1.3 77455 1m0uA 249 6.35e+01 a.45.1.1,c.47.1.5 78359,78360 1y2tA 142 6.38e+01 1zs4A 83 6.46e+01 1qznA 173 6.46e+01 b.2.2.2 104669 1sbp 310 6.49e+01 1sbp c.94.1.1 35760 2ftuA 118 6.51e+01 1xg0B 67 6.52e+01 1ah7 245 6.57e+01 1ah7 a.124.1.1 19339 2b5dX 528 6.63e+01 2b3yA 888 6.64e+01 1pgtA 210 6.65e+01 1pgtA a.45.1.1,c.47.1.5 17515,32809 1z8uA 102 6.68e+01 1wouA 123 6.71e+01 c.47.1.16 109471 1oe8A 211 6.76e+01 a.45.1.1,c.47.1.5 86905,86906 2gi3A 476 6.76e+01 1vp8A 201 6.77e+01 1b0uA 262 6.78e+01 1b0uA c.37.1.12 32370 1h3oB 76 6.79e+01 a.22.1.3 76645 1p5zB 263 6.79e+01 c.37.1.1 87815 1t6cA 315 6.80e+01 c.55.1.8,c.55.1.8 106558,106559 1lqtA 456 6.82e+01 c.3.1.1,c.4.1.1 74198,74199 1tzyB 126 6.85e+01 a.22.1.1 107531 1c7sA 858 6.89e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1ypyA 184 7.03e+01 1sjdA 368 7.04e+01 c.1.11.2,d.54.1.1 105632,105633 1szoA 257 7.05e+01 c.14.1.3 106164 1i4dA 224 7.05e+01 h.4.7.1 61682 1y8aA 332 7.06e+01 1to6A 371 7.07e+01 c.141.1.1 107170 1pzlA 237 7.10e+01 a.123.1.1 104393 1evsA 187 7.12e+01 1evsA a.26.1.1 16845 1jf8A 131 7.15e+01 c.44.1.1 66621 1r8eA 278 7.21e+01 a.6.1.3,d.60.1.1 104843,104844 1ywfA 296 7.24e+01 1clc 639 7.28e+01 1clc a.102.1.2,b.1.18.2 18835,21872 1k1vA 41 7.29e+01 a.37.1.1 71999 1z90A 469 7.32e+01 2c2aA 258 7.36e+01 2h3bA 494 7.39e+01 2cfxA 144 7.41e+01 1tqhA 247 7.41e+01 c.69.1.29 107225 1y7yA 74 7.42e+01 1kktA 511 7.43e+01 a.102.2.1 68687 1yqgA 263 7.44e+01 2b5gA 171 7.48e+01 2cq8A 110 7.49e+01 1owfA 99 7.49e+01 a.55.1.1 87487 1ev0A 58 7.49e+01 1ev0A d.71.1.1 39594 1u1tA 82 7.52e+01 1fcyA 236 7.52e+01 2lbd a.123.1.1 19282 1u1sA 82 7.52e+01 1kb9B 352 7.57e+01 d.185.1.1,d.185.1.1 77313,77314 1o50A 157 7.58e+01 d.37.1.1,d.37.1.1 92478,92479 1rxdA 159 7.61e+01 1v0lA 313 7.62e+01 c.1.8.3 108207 2apjA 260 7.68e+01 1s9pA 227 7.69e+01 a.123.1.1 105384 1jksA 294 7.70e+01 d.144.1.7 71710 1px5A 349 7.72e+01 a.160.1.2,d.218.1.6 95277,95278 2ao9A 155 7.73e+01 1oj4A 283 7.76e+01 d.14.1.5,d.58.26.5 93083,93084 2gh1A 301 7.77e+01 1olmA 403 7.82e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1a41 234 7.83e+01 1a41 d.163.1.2 42174 1vzoA 355 7.87e+01 d.144.1.7 108971 1yn9A 169 7.91e+01 1lm4A 194 8.00e+01 d.167.1.1 84626 1mj3A 260 8.13e+01 c.14.1.3 79183 1jnmA 62 8.17e+01 h.1.3.1 84181 1m4jA 142 8.17e+01 d.109.1.2 78602 1gvdA 52 8.19e+01 a.4.1.3 83338 1wpuA 147 8.44e+01 1cpcA 162 8.44e+01 1cpcA a.1.1.3 15643 2akzA 439 8.50e+01 1q2hA 69 8.51e+01 a.34.4.1 104498 1jsdB 176 8.55e+01 h.3.1.1 63259 2f62A 161 8.60e+01 1a32 88 8.63e+01 1a32 a.16.1.2 16384 1uok 558 8.68e+01 1uok b.71.1.1,c.1.8.1 27801,28788 1ka2A 499 8.69e+01 d.92.1.5 77305 1oh0A 131 8.70e+01 d.17.4.3 87004 2bptA 861 8.71e+01 1j2rA 199 8.74e+01 c.33.1.3 90788 1tkiA 321 8.75e+01 1tkiA d.144.1.7 41638 1r44A 202 8.77e+01 d.65.1.4 104787 2ahqA 76 8.84e+01 1mv8A 436 8.88e+01 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1rh5A 436 8.93e+01 f.41.1.1 97464 1ufbA 127 8.95e+01 a.24.16.3 99331