# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1t3wA 148 9.06e-02 1xhdA 173 1.97e-01 2fbhA 146 5.56e-01 1lj9A 144 5.76e-01 a.4.5.28 78035 1y96B 85 5.79e-01 2beqD 48 6.58e-01 2au5A 139 7.91e-01 2gboA 104 9.72e-01 1v3wA 173 1.10e+00 b.81.1.5 100291 1wdtA 665 1.12e+00 1ofcX 304 1.65e+00 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1l8dA 112 1.71e+00 h.4.12.1 73687 1t95A 240 1.92e+00 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1nrlA 316 2.77e+00 a.123.1.1 92091 1f32A 149 3.08e+00 1f32A d.62.1.1 39539 2bskB 90 3.23e+00 1sczA 233 3.38e+00 c.43.1.1 98802 2a6sA 84 3.43e+00 1avsA 90 3.83e+00 1cll a.39.1.5 17226 2c2aA 258 4.03e+00 1wy1A 172 4.09e+00 1v1dA 31 4.18e+00 1dp3A 55 5.01e+00 1dp3A a.55.1.2 59128 2ap3A 199 5.28e+00 1tgrA 52 5.31e+00 1olmA 403 5.36e+00 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1wmiB 67 5.77e+00 2fji1 399 5.99e+00 1czqA 46 6.06e+00 1czqA h.3.2.1 45720 1yzmA 51 6.06e+00 1eca 136 6.45e+00 1flp a.1.1.2 15209 1dpsA 167 6.45e+00 1dpsA a.25.1.1 16716 2bezF 42 6.51e+00 1sknP 92 6.72e+00 1sknP a.37.1.1 17127 1qwoA 442 6.84e+00 c.60.1.2 104620 2c5kT 95 7.88e+00 1r1hA 696 8.05e+00 d.92.1.4 104756 1go3F 107 8.68e+00 a.60.8.2 65407 1jixA 351 8.93e+00 1c3jA c.87.1.1 63081 2aukA 190 9.35e+00 2es4D 332 9.37e+00 1wmhA 89 9.55e+00 1rgxA 114 9.59e+00 g.77.1.1 104932 2fueA 262 1.00e+01 1wlqC 201 1.01e+01 a.4.5.52 109400 1lnwA 147 1.02e+01 a.4.5.28 78104 1yy7A 213 1.04e+01 1useA 45 1.07e+01 1ic2A 81 1.10e+01 h.1.5.1 62247 1ggzA 148 1.13e+01 a.39.1.5 70176 2fu2A 102 1.23e+01 2dd8S 202 1.26e+01 1nt2B 258 1.36e+01 a.183.1.1 86150 1fy7A 278 1.43e+01 1fy7A d.108.1.1 40817 1o6dA 163 1.43e+01 c.116.1.3 92567 2f3yA 148 1.44e+01 1jnmA 62 1.44e+01 h.1.3.1 84181 1tmxA 293 1.46e+01 1wdpA 495 1.46e+01 1iwmA 186 1.52e+01 b.125.1.2 83758 2fsjA 346 1.55e+01 1zavU 30 1.61e+01 1hfeS 123 1.67e+01 1hfeS a.137.4.1 19640 2f6mA 65 1.75e+01 1eumA 165 1.75e+01 1eumA a.25.1.1 59507 1vqoV 71 1.75e+01 1f46A 140 1.76e+01 1f46A d.129.4.1 59643 1m1eB 81 1.76e+01 a.161.1.1 78400 2a26A 50 1.80e+01 1winA 143 1.88e+01 1n1jA 93 1.92e+01 a.22.1.3 79813 2gv5C 73 1.99e+01 1h8eA 510 2.12e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1v77A 212 2.12e+01 c.6.3.2 108402 2erbA 125 2.16e+01 1uw4A 91 2.28e+01 d.58.7.4 100071 1fr2A 86 2.35e+01 a.28.2.1 83256 1vzjA 40 2.43e+01 1g8iA 190 2.49e+01 1rec a.39.1.5 60363 1sfxA 109 2.49e+01 a.4.5.50 105505 2bm8A 236 2.49e+01 1wq6A 72 2.50e+01 2ar0A 541 2.51e+01 1w7jB 151 2.52e+01 1upvA 257 2.60e+01 1snnA 227 2.61e+01 d.115.1.2 105821 1tzyD 103 2.63e+01 a.22.1.1 107533 2ajrA 331 2.63e+01 1vd3A 217 2.65e+01 1nkpA 88 2.65e+01 a.38.1.1 80573 1gs9A 165 2.65e+01 a.24.1.1 83313 2af4C 333 2.68e+01 2cq8A 110 2.73e+01 1wdcC 156 2.77e+01 1wdcC a.39.1.5 17317 1v30A 124 2.82e+01 2es9A 115 2.89e+01 1ockA 412 2.91e+01 c.117.1.1 86802 1fcqA 350 2.95e+01 c.1.8.9 65006 1b0nB 57 2.97e+01 1b0nB a.34.1.1 17002 1xhnA 184 2.99e+01 2fm9A 215 3.04e+01 1r44A 202 3.14e+01 d.65.1.4 104787 1ql3A 99 3.17e+01 1ycc a.3.1.1 15822 1qo7A 394 3.18e+01 1qo7A c.69.1.11 34697 1j30A 144 3.19e+01 a.25.1.1 90806 1jmtA 104 3.19e+01 d.58.7.3 63180 1siqA 392 3.23e+01 a.29.3.1,e.6.1.1 105585,105586 1f02T 66 3.23e+01 1f02T j.67.1.1 46360 1z0pA 84 3.28e+01 1k92A 455 3.33e+01 c.26.2.1,d.210.1.1 68325,68326 1xteA 154 3.35e+01 2ck3A 510 3.37e+01 1pmzA 86 3.41e+01 a.39.1.10 104195 1fjgK 129 3.45e+01 1fjfK c.55.4.1 33733 1z8uA 102 3.46e+01 2b1eA 564 3.48e+01 1wq3A 322 3.52e+01 1qy6A 274 3.58e+01 b.47.1.1 96574 1on2A 142 3.60e+01 a.4.5.24,a.76.1.1 87103,87104 2gb7A 305 3.74e+01 1dekA 241 3.80e+01 1dekA c.37.1.1 31842 1eyhA 144 3.82e+01 1eduA a.118.9.1 19214 1fzcA 87 3.85e+01 1fzcA h.1.8.1 45590 1sd4A 126 3.85e+01 a.4.5.39 105428 1vjvA 415 4.02e+01 d.3.1.9 108632 1yzyA 413 4.02e+01 1uedA 406 4.13e+01 a.104.1.1 99256 1w7jA 795 4.17e+01 1xzoA 174 4.36e+01 1u2eA 289 4.42e+01 1yz1A 174 4.48e+01 1iomA 377 4.48e+01 a.103.1.1 83698 1lqaA 346 4.50e+01 c.1.7.1 84674 1rz4A 226 4.62e+01 a.4.5.53,a.118.1.18 105131,105132 1nmeA 146 4.66e+01 c.17.1.1 85874 1k5nA 276 4.70e+01 b.1.1.2,d.19.1.1 77266,77267 2h1nA 567 4.71e+01 1iioA 84 4.72e+01 a.39.4.1 66150 1aj8A 371 4.74e+01 1aj8A a.103.1.1 18900 2h4uA 145 4.76e+01 1pcfA 66 4.86e+01 1pcfA d.18.1.1 38142 2chgA 226 4.98e+01 1q4rA 112 4.99e+01 d.58.4.4 95823 1zkkA 167 5.14e+01 6rlxA 24 5.20e+01 1lvfA 110 5.22e+01 a.47.2.1 74280 1pi1A 185 5.23e+01 a.29.7.1 94699 1ez3A 127 5.29e+01 1dn1B a.47.2.1 17768 1ydxA 406 5.42e+01 1vr5A 547 5.42e+01 1no4A 97 5.65e+01 h.1.24.1 85918 1k1vA 41 5.69e+01 a.37.1.1 71999 1gesA 450 5.69e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1flcB 175 5.78e+01 1flcB h.3.1.1 45716 1sszA 34 5.82e+01 j.35.1.1 105999 1m46B 25 5.84e+01 1tdpA 111 5.85e+01 a.29.8.1 106781 1t7rA 269 5.91e+01 a.123.1.1 106635 1owfA 99 5.94e+01 a.55.1.1 87487 1j1jA 240 6.08e+01 a.118.16.1 90762 1dtc 27 6.09e+01 j.7.1.1 46109 2co5A 99 6.16e+01 1rhs 296 6.19e+01 1rhs c.46.1.2,c.46.1.2 32703,32704 1ns5A 155 6.22e+01 c.116.1.3 80705 1wvqA 167 6.23e+01 1t5bA 201 6.26e+01 c.23.5.3 106433 1mw9X 592 6.27e+01 e.10.1.1 91480 1xcrA 316 6.28e+01 1jboB 172 6.39e+01 a.1.1.3 84151 1z9bA 135 6.41e+01 1n4kA 381 6.41e+01 a.118.22.1,b.42.6.1 79992,79993 2czrA 226 6.43e+01 2fa8A 105 6.47e+01 1a7w 69 6.48e+01 1a7w a.22.1.2 16477 1u9iA 519 6.49e+01 1em8B 112 6.50e+01 c.126.1.1 90458 2c4jA 218 6.50e+01 1ev0A 58 6.52e+01 1ev0A d.71.1.1 39594 2bfdA 400 6.53e+01 1u96A 69 6.60e+01 1ow4A 129 6.60e+01 a.39.2.1 93628 1uz3A 102 6.73e+01 1o5uA 101 6.92e+01 b.82.1.8 92518 2aaxA 275 6.96e+01 1wqgA 185 7.05e+01 1kn1A 160 7.05e+01 a.1.1.3 77455 1lj2A 110 7.07e+01 h.1.13.2 73926 1a41 234 7.07e+01 1a41 d.163.1.2 42174 1v5iB 76 7.07e+01 2dc3A 193 7.11e+01 1kilE 49 7.16e+01 h.1.15.1 72522 1s9kD 53 7.17e+01 1iytA 42 7.20e+01 j.42.1.1 76974 2gmfA 127 7.21e+01 2gmfA a.26.1.2 16849 1qjtA 99 7.21e+01 1eh2 a.39.1.6 17335 1imt 80 7.24e+01 1imt g.3.10.1,g.3.10.1 44201,44202 1bj7 156 7.26e+01 1bj7 b.60.1.1 27113 2b95A 106 7.27e+01 1x7yA 400 7.29e+01 1ztpA 251 7.31e+01 1j2jB 45 7.40e+01 a.7.8.1 84017 1cpcB 172 7.42e+01 1qgwC a.1.1.3 15644 1uslA 170 7.50e+01 c.121.1.1 99871 1nf3A 195 7.53e+01 c.37.1.8 85594 1dmhA 311 7.57e+01 1dmhA b.3.6.1 22633 2fikA 287 7.57e+01 1iz5A 249 7.58e+01 d.131.1.2,d.131.1.2 83834,83835 1m0uA 249 7.65e+01 a.45.1.1,c.47.1.5 78359,78360 1e5pA 151 7.65e+01 1bj7 b.60.1.1 59272 1m1cA 680 7.71e+01 e.42.1.1 78395 1dc1A 323 7.75e+01 1dc1A c.52.1.11 33321 2cq2A 114 7.77e+01 1yycA 174 7.84e+01 1yqgA 263 7.86e+01 2pia 321 7.88e+01 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1g0oA 283 7.88e+01 1ybvA c.2.1.2 60181 1m55A 197 7.98e+01 d.89.1.3 74469 1l7yA 94 7.99e+01 d.15.1.6 73676 2b5dX 528 8.01e+01 1doi 128 8.02e+01 1awd d.15.4.1 37676 1ykiA 217 8.06e+01 1ukcA 522 8.11e+01 c.69.1.17 107911 1p4cA 380 8.23e+01 c.1.4.1 94100 1c75A 71 8.29e+01 451c a.3.1.1 15796 2d4pA 141 8.36e+01 1fn9A 365 8.45e+01 1fn9A d.196.1.1 59894 1oq9A 363 8.56e+01 a.25.1.2 87257 1tjlA 151 8.63e+01 a.2.14.1,g.39.1.13 107027,107028 1m5iA 125 8.64e+01 h.4.13.1 78648 1wphA 201 8.73e+01 1cpq 129 8.75e+01 1cpq a.24.3.2 16556 1fcdA 401 8.82e+01 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1xffA 240 8.97e+01 d.153.1.1 109580 1ignA 246 8.97e+01 1ignA a.4.1.6,a.4.1.6 16048,16049