# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2aexA 346 3.54e-01 1oyc 400 9.75e-01 1oyc c.1.4.1 28603 1y96B 85 1.04e+00 2c5kT 95 1.22e+00 1wdpA 495 1.25e+00 1t3wA 148 1.53e+00 1bbhA 131 1.92e+00 1bbhA a.24.3.2 16546 1lj9A 144 2.22e+00 a.4.5.28 78035 1jixA 351 2.33e+00 1c3jA c.87.1.1 63081 2fbhA 146 2.33e+00 2b1eA 564 2.63e+00 2h0uA 217 2.73e+00 1ynfA 458 3.05e+00 1q74A 303 3.24e+00 c.134.1.1 96019 1yirA 408 3.26e+00 1eca 136 3.48e+00 1flp a.1.1.2 15209 1f46A 140 4.02e+00 1f46A d.129.4.1 59643 1t95A 240 4.04e+00 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1tw9A 206 4.36e+00 a.45.1.1,c.47.1.5 107381,107382 1txnA 328 4.42e+00 1wdtA 665 4.58e+00 2au5A 139 4.81e+00 2beqD 48 5.34e+00 2agaA 190 5.53e+00 1h6pA 203 5.55e+00 a.146.1.1 60690 1wkyA 464 6.30e+00 1eejA 216 6.39e+00 1eejA c.47.1.9,d.17.3.1 33057,38071 1xhdA 173 6.44e+00 1wy1A 172 6.90e+00 1omrA 201 7.06e+00 a.39.1.5 93349 1n4kA 381 7.12e+00 a.118.22.1,b.42.6.1 79992,79993 1wmhA 89 7.99e+00 2amdA 311 8.00e+00 2etxA 209 8.10e+00 1ir6A 424 8.15e+00 c.107.1.2 71342 2a6sA 84 8.25e+00 1iscA 192 8.37e+00 1avmA a.2.11.1,d.44.1.1 15733,38726 1y7qA 98 8.61e+00 1y9qA 192 9.06e+00 1ym3A 215 9.19e+00 1a7w 69 9.63e+00 1a7w a.22.1.2 16477 1ockA 412 1.07e+01 c.117.1.1 86802 2fsjA 346 1.07e+01 2fueA 262 1.08e+01 1m1eB 81 1.11e+01 a.161.1.1 78400 1avsA 90 1.11e+01 1cll a.39.1.5 17226 1b0b 142 1.13e+01 2fal a.1.1.2 15010 1b0nA 111 1.13e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 1jo0A 98 1.13e+01 d.68.4.1 77140 2f62A 161 1.19e+01 1ofcX 304 1.24e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1grj 158 1.24e+01 1grj a.2.1.1,d.26.1.2 15691,38433 2erbA 125 1.28e+01 1j93A 353 1.29e+01 c.1.22.1 66454 1v1dA 31 1.29e+01 1hulA 108 1.29e+01 1hulA a.26.1.2 16865 2chgA 226 1.36e+01 2f6mA 65 1.37e+01 1cpq 129 1.38e+01 1cpq a.24.3.2 16556 1r2rA 248 1.44e+01 c.1.1.1 96875 2cvhA 220 1.45e+01 2fu2A 102 1.45e+01 1y791 680 1.46e+01 1pvmA 184 1.46e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1cvrA 435 1.53e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 2b5aA 77 1.54e+01 1sczA 233 1.55e+01 c.43.1.1 98802 1vjeA 166 1.58e+01 d.185.1.2 100807 1wmaA 276 1.60e+01 1uw4A 91 1.60e+01 d.58.7.4 100071 2ajrA 331 1.62e+01 1dugA 234 1.65e+01 1b8xA a.45.1.1,c.47.1.5 17718,33012 2fnoA 248 1.66e+01 1r0mA 375 1.70e+01 c.1.11.2,d.54.1.1 104747,104748 1ovnA 248 1.72e+01 a.71.1.1,c.47.1.7 93602,93603 2ffuA 501 1.73e+01 1xpcA 248 1.76e+01 1h5rA 293 1.80e+01 c.68.1.6 65623 1g0cA 364 1.80e+01 7a3hA c.1.8.3 60165 1upvA 257 1.85e+01 1ajsA 412 1.89e+01 1ajsA c.67.1.1 34276 2af4C 333 1.92e+01 2fefA 294 1.95e+01 1azo 232 1.95e+01 1azo c.52.1.14 33329 1tr0A 108 1.97e+01 d.58.4.4 107261 1sauA 115 2.01e+01 2cfxA 144 2.02e+01 1h8eA 510 2.06e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1woyA 500 2.07e+01 1lvfA 110 2.07e+01 a.47.2.1 74280 1paqA 189 2.15e+01 a.118.1.14 94413 1lqtA 456 2.20e+01 c.3.1.1,c.4.1.1 74198,74199 2basA 431 2.23e+01 1auoA 218 2.24e+01 1auoA c.69.1.14 34716 1v3wA 173 2.24e+01 b.81.1.5 100291 1izmA 184 2.30e+01 a.199.1.1 90725 1dp3A 55 2.33e+01 1dp3A a.55.1.2 59128 2bskB 90 2.36e+01 2aukA 190 2.50e+01 1r2zA 274 2.57e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1kv5A 250 2.59e+01 c.1.1.1 73052 1zuhA 168 2.59e+01 1xd8A 289 2.62e+01 1keaA 221 2.62e+01 a.96.1.2 68491 1cmcA 104 2.63e+01 1cmbA a.43.1.5 17462 2gwgA 350 2.63e+01 1nvmA 345 2.69e+01 a.5.7.1,c.1.10.5 86249,86250 1iznB 277 2.83e+01 e.43.1.2 83848 2ck3A 510 2.84e+01 1t5bA 201 2.87e+01 c.23.5.3 106433 1p5zB 263 2.90e+01 c.37.1.1 87815 1k2xB 143 2.91e+01 1syyA 346 2.92e+01 a.25.1.2 106126 1zjcA 418 2.93e+01 2cybA 323 2.93e+01 1wmiB 67 2.94e+01 1v2zA 111 2.96e+01 a.186.1.1 108300 1czqA 46 2.99e+01 1czqA h.3.2.1 45720 1qazA 351 2.99e+01 1qazA a.102.3.1 18848 1b67A 68 3.00e+01 1a7w a.22.1.2 16474 1n3lA 372 3.05e+01 c.26.1.1 79966 1cojA 212 3.05e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1rkbA 173 3.06e+01 1yf3A 259 3.11e+01 1edg 380 3.13e+01 1edg c.1.8.3 28807 1xk5A 204 3.13e+01 1vflA 356 3.19e+01 2ezvA 269 3.24e+01 1ufmA 84 3.25e+01 a.4.5.47 107816 1dekA 241 3.27e+01 1dekA c.37.1.1 31842 1puoA 170 3.29e+01 a.101.1.1,a.101.1.1 95134,95135 1wbeA 209 3.31e+01 1yozA 116 3.35e+01 1fexA 59 3.42e+01 a.4.1.3 59803 1y7yA 74 3.42e+01 2gl5A 410 3.43e+01 2db0A 253 3.44e+01 2apjA 260 3.45e+01 1q45A 391 3.48e+01 c.1.4.1 95780 2fcwA 109 3.49e+01 1to6A 371 3.52e+01 c.141.1.1 107170 2cxxA 190 3.56e+01 1ofdA 1520 3.56e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1lm4A 194 3.57e+01 d.167.1.1 84626 1uok 558 3.59e+01 1uok b.71.1.1,c.1.8.1 27801,28788 1qjtA 99 3.59e+01 1eh2 a.39.1.6 17335 2gb7A 305 3.63e+01 1wekA 217 3.66e+01 1p65A 73 3.74e+01 d.254.1.1 94156 2gdzA 267 3.88e+01 1sdiA 213 3.89e+01 a.198.1.1 105437 1pkhA 204 3.89e+01 b.85.4.1 94832 2ap3A 199 3.94e+01 1spvA 184 3.96e+01 c.50.1.2 98957 1m0uA 249 3.99e+01 a.45.1.1,c.47.1.5 78359,78360 1wi9A 72 3.99e+01 1jk0B 345 4.00e+01 a.25.1.2 63143 1bj7 156 4.06e+01 1bj7 b.60.1.1 27113 1ak0 270 4.11e+01 1ak0 a.124.1.2 19345 1i4dA 224 4.15e+01 h.4.7.1 61682 1q5dA 419 4.16e+01 a.104.1.1 95891 2c4jA 218 4.16e+01 2ar0A 541 4.22e+01 1kqpA 271 4.29e+01 c.26.2.1 72883 1z90A 469 4.31e+01 1aj8A 371 4.34e+01 1aj8A a.103.1.1 18900 1vyrA 364 4.35e+01 c.1.4.1 108906 1im5A 180 4.43e+01 c.33.1.3 66211 1tzzA 392 4.52e+01 2b8wA 328 4.58e+01 1y2kA 349 4.58e+01 1l7yA 94 4.65e+01 d.15.1.6 73676 1nkpA 88 4.67e+01 a.38.1.1 80573 2bezF 42 4.71e+01 1ow4A 129 4.74e+01 a.39.2.1 93628 1xeuA 263 4.75e+01 2f5tX 233 4.79e+01 1ji6A 589 4.83e+01 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 2f9dA 125 4.84e+01 1ew6A 137 4.84e+01 1ewaA a.1.1.2 15637 1y8qA 346 4.93e+01 1woqA 267 5.01e+01 c.55.1.10,c.55.1.10 109462,109463 1btkA 169 5.01e+01 1btkA b.55.1.1 26959 1l0wA 580 5.06e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1e5pA 151 5.06e+01 1bj7 b.60.1.1 59272 1c1dA 355 5.10e+01 1bw9A c.2.1.7,c.58.1.1 30270,33918 2eulA 156 5.11e+01 2fikA 287 5.13e+01 1z0xA 220 5.14e+01 1whzA 70 5.14e+01 1fr2A 86 5.20e+01 a.28.2.1 83256 1k3bB 164 5.23e+01 d.3.1.1 72015 2f2eA 146 5.26e+01 1ka1A 357 5.32e+01 e.7.1.1 68369 1gjnA 153 5.40e+01 a.1.1.2 70191 1b0nB 57 5.42e+01 1b0nB a.34.1.1 17002 1w8sA 263 5.42e+01 3tmkA 216 5.49e+01 3tmkA c.37.1.1 31920 1k5nA 276 5.51e+01 b.1.1.2,d.19.1.1 77266,77267 1nh1A 330 5.51e+01 e.45.1.1 91871 2b18A 164 5.54e+01 1wc3A 219 5.54e+01 1ek9A 428 5.56e+01 1ek9A f.5.1.1 43809 1vbuA 328 5.58e+01 2f46A 156 5.58e+01 1xteA 154 5.66e+01 1sjdA 368 5.67e+01 c.1.11.2,d.54.1.1 105632,105633 1zljA 78 5.69e+01 2frfA 153 5.69e+01 1or4A 178 5.72e+01 a.1.1.2 93447 2gv5C 73 5.74e+01 1f6vA 91 5.74e+01 1f6vA a.49.1.1 17791 1qhtA 775 5.74e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1gmlA 178 5.76e+01 c.8.5.2 70273 1u53A 196 5.79e+01 1yzmA 51 5.83e+01 1acf 125 5.89e+01 3nul d.110.1.1 40882 1mj3A 260 5.93e+01 c.14.1.3 79183 1nkd 65 5.94e+01 1nkd a.30.1.1 16974 1zroA 602 5.96e+01 1y97A 238 5.96e+01 2gokA 429 6.06e+01 1v77A 212 6.11e+01 c.6.3.2 108402 2a4vA 159 6.11e+01 1b8zA 90 6.15e+01 1huuA a.55.1.1 17902 1zwwA 256 6.17e+01 1j9lA 247 6.17e+01 c.106.1.1 62762 1r44A 202 6.23e+01 d.65.1.4 104787 1wzvA 155 6.24e+01 1ql3A 99 6.29e+01 1ycc a.3.1.1 15822 1eluA 390 6.30e+01 1elqA c.67.1.3 34434 1k1vA 41 6.30e+01 a.37.1.1 71999 1ii7A 333 6.32e+01 1ii7A d.159.1.4 62415 1rxdA 159 6.38e+01 1wpuA 147 6.39e+01 1icpA 376 6.41e+01 1oyc c.1.4.1 62270 2bkaA 242 6.47e+01 1h97A 147 6.48e+01 1h97A a.1.1.2 60812 1j77A 209 6.49e+01 1j77A a.132.1.2 62674 1dpsA 167 6.49e+01 1dpsA a.25.1.1 16716 1om1A 332 6.49e+01 d.144.1.7 93347 1zbsA 291 6.51e+01 1wrdA 103 6.57e+01 2di4A 238 6.58e+01 1me8A 503 6.64e+01 c.1.5.1 79028 1yy7A 213 6.69e+01 1vjuA 309 6.70e+01 d.248.1.1 100835 1qsmA 152 6.77e+01 1qsmA d.108.1.1 40808 2gboA 104 6.78e+01 2a2rA 210 6.78e+01 1v0lA 313 6.82e+01 c.1.8.3 108207 1pl4A 198 6.87e+01 a.2.11.1,d.44.1.1 94854,94855 1o50A 157 6.91e+01 d.37.1.1,d.37.1.1 92478,92479 1z0kB 69 7.03e+01 1regX 122 7.08e+01 1regX d.58.27.1 39406 1uddA 226 7.13e+01 a.132.1.3 107776 1tn6A 382 7.20e+01 1v63A 101 7.22e+01 a.21.1.1 108391 1q0rA 298 7.40e+01 c.69.1.28 95508 1z7xW 461 7.50e+01 1fy7A 278 7.50e+01 1fy7A d.108.1.1 40817 1vykA 149 7.52e+01 2czrA 226 7.56e+01 1g6uA 48 7.56e+01 1g6uA k.9.1.1 46425 2f23A 156 7.56e+01 1vzjA 40 7.60e+01 1oaqH 121 7.61e+01 b.1.1.1 92707 1sknP 92 7.65e+01 1sknP a.37.1.1 17127 1ydmA 187 7.66e+01 2tpsA 227 7.66e+01 2tpsA c.1.3.1 28591 1fviA 297 7.71e+01 1fviA b.40.4.6,d.142.2.1 25364,41578 1j09A 468 7.73e+01 a.97.1.1,c.26.1.1 77025,77026 1lbkA 208 7.76e+01 a.45.1.1,c.47.1.5 73809,73810 1n55A 251 7.77e+01 c.1.1.1 80007 1ev0A 58 7.85e+01 1ev0A d.71.1.1 39594 1l8dA 112 7.85e+01 h.4.12.1 73687 2cq2A 114 7.88e+01 1m2dA 110 7.88e+01 c.47.1.11 78476 1iq4A 179 7.94e+01 1iq4A d.77.1.1 62641 1lnwA 147 8.00e+01 a.4.5.28 78104 2d4pA 141 8.01e+01 1uz5A 402 8.01e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1wi6A 88 8.05e+01 1wrrA 301 8.06e+01 1no4A 97 8.06e+01 h.1.24.1 85918 1a6m 151 8.12e+01 1a6m a.1.1.2 15018 1swvA 267 8.15e+01 1y8aA 332 8.22e+01 1oeyJ 107 8.31e+01 d.15.2.2 92804 2f5xA 312 8.42e+01 1y74A 57 8.44e+01 1rylA 167 8.44e+01 d.276.1.1 105124 1jboA 162 8.49e+01 a.1.1.3 84150 1tu7A 208 8.53e+01 1n1jA 93 8.53e+01 a.22.1.3 79813 1ku1A 230 8.59e+01 a.118.3.1 72996 2cqsA 842 8.61e+01 4ubpA 101 8.65e+01 1ubpA d.8.1.1 37352 1rypK 198 8.71e+01 d.153.1.4 41879 1js1X 324 8.78e+01 c.78.1.1,c.78.1.1 71834,71835 1vpt 348 8.82e+01 3mag c.66.1.25 34207 1q15A 503 8.83e+01 c.26.2.1,d.153.1.1 95538,95539 1ppjB 439 8.92e+01 d.185.1.1,d.185.1.1 104254,104255 1tkiA 321 8.93e+01 1tkiA d.144.1.7 41638 1brwA 433 8.94e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626