# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hfeS 123 5.66e-01 1hfeS a.137.4.1 19640 1y96B 85 1.40e+00 2gboA 104 2.74e+00 1wdtA 665 2.80e+00 2a2fX 325 3.42e+00 1qo7A 394 3.87e+00 1qo7A c.69.1.11 34697 1xhdA 173 4.29e+00 2ezh 75 5.82e+00 2ezh a.4.1.2 16029 1wmhA 89 5.88e+00 1p9yA 121 6.46e+00 d.241.2.1 94402 1y7qA 98 6.94e+00 1ybxA 143 7.83e+00 1dwkA 156 8.01e+00 1dw9A a.35.1.4,d.72.1.1 17075,39606 2dd8S 202 9.53e+00 1zs4A 83 1.01e+01 2vsgA 358 1.03e+01 2vsgA h.4.1.1 45780 2f6hX 419 1.08e+01 2chgA 226 1.11e+01 2bfdA 400 1.13e+01 1x7yA 400 1.27e+01 1grj 158 1.34e+01 1grj a.2.1.1,d.26.1.2 15691,38433 1vzsA 76 1.42e+01 f.45.1.1 108972 1dp3A 55 1.47e+01 1dp3A a.55.1.2 59128 1bg1A 722 1.49e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 1tzyD 103 1.62e+01 a.22.1.1 107533 2fueA 262 1.63e+01 1y14B 171 1.64e+01 1vdlA 80 1.65e+01 a.5.2.1 108528 2beqD 48 1.69e+01 1m1eB 81 1.73e+01 a.161.1.1 78400 2ghjA 118 1.85e+01 1v1dA 31 1.98e+01 1fjgL 135 2.03e+01 1fjfL b.40.4.5 25346 1ev0A 58 2.04e+01 1ev0A d.71.1.1 39594 1ib8A 164 2.05e+01 b.38.2.1,d.52.4.1 71168,71169 1avsA 90 2.10e+01 1cll a.39.1.5 17226 1cpq 129 2.15e+01 1cpq a.24.3.2 16556 2c5kT 95 2.17e+01 1kn7A 78 2.20e+01 j.12.1.1 84413 1doi 128 2.21e+01 1awd d.15.4.1 37676 1ylxA 103 2.23e+01 2gv5C 73 2.33e+01 1jeyB 565 2.40e+01 1jeqB b.131.1.2,c.62.1.4 90372,90373 2c2aA 258 2.45e+01 1k5nA 276 2.53e+01 b.1.1.2,d.19.1.1 77266,77267 1owfA 99 2.53e+01 a.55.1.1 87487 1ofcX 304 2.54e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1lj9A 144 2.91e+01 a.4.5.28 78035 1tjlA 151 2.95e+01 a.2.14.1,g.39.1.13 107027,107028 1uw4A 91 2.99e+01 d.58.7.4 100071 1tq4A 413 3.08e+01 c.37.1.8 107201 2aukA 190 3.30e+01 1xzoA 174 3.35e+01 1ns5A 155 3.49e+01 c.116.1.3 80705 1uedA 406 3.53e+01 a.104.1.1 99256 1nu7D 282 3.65e+01 a.8.6.1,a.8.6.1 92191,92192 1mkkA 96 3.69e+01 g.17.1.1 79240 1fexA 59 3.73e+01 a.4.1.3 59803 1j1jA 240 3.74e+01 a.118.16.1 90762 1t3wA 148 3.82e+01 2fji1 399 3.88e+01 1nkd 65 3.91e+01 1nkd a.30.1.1 16974 1jixA 351 3.91e+01 1c3jA c.87.1.1 63081 1zroA 602 3.96e+01 2fbhA 146 4.04e+01 1v3wA 173 4.05e+01 b.81.1.5 100291 1umdA 367 4.13e+01 c.36.1.11 99599 1b67A 68 4.29e+01 1a7w a.22.1.2 16474 1xouA 192 4.33e+01 1ji6A 589 4.41e+01 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1olmA 403 4.41e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1ykiA 217 4.45e+01 1z8kA 193 4.51e+01 1r59O 505 4.54e+01 1ahl 49 4.55e+01 1ahl g.9.1.1 44601 1z0pA 84 4.63e+01 1w07A 659 4.65e+01 1wy1A 172 4.68e+01 1vjvA 415 4.74e+01 d.3.1.9 108632 1n7sC 79 4.81e+01 h.1.15.1 80273 1upvA 257 5.11e+01 1szoA 257 5.22e+01 c.14.1.3 106164 1poiA 317 5.24e+01 1poiA c.124.1.2 34153 1lenB 52 5.24e+01 2ltnB 1sszA 34 5.26e+01 j.35.1.1 105999 1n0qA 93 5.57e+01 k.37.1.1 79754 2d68A 82 5.58e+01 1ic2A 81 5.64e+01 h.1.5.1 62247 1efpB 252 5.75e+01 1efvB c.26.2.3 31636 1uacH 114 5.75e+01 b.1.1.1 99132 1wu9A 80 5.84e+01 1vkuA 100 5.88e+01 a.28.1.1 108690 2fm9A 215 5.89e+01 1lvfA 110 5.90e+01 a.47.2.1 74280 1x54A 434 5.93e+01 1ie9A 259 6.20e+01 1db1A a.123.1.1 62318 1zfjA 491 6.43e+01 1ak5 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 1k92A 455 6.56e+01 c.26.2.1,d.210.1.1 68325,68326 1dc1A 323 6.58e+01 1dc1A c.52.1.11 33321 1noyA 388 6.60e+01 1clqA c.55.3.5 33713 1dvoA 152 6.62e+01 1dvoA a.136.1.1 19623 1ya5T 90 6.63e+01 1u4nA 310 6.94e+01 1yzyA 413 7.08e+01 1a7w 69 7.20e+01 1a7w a.22.1.2 16477 1p65A 73 7.21e+01 d.254.1.1 94156 1vmbA 140 7.23e+01 1wwcA 118 7.43e+01 1wwcA b.1.1.4 21778 1f5vA 240 7.43e+01 1bkjA d.90.1.1 40255 2f31A 233 7.51e+01 1wmiB 67 7.58e+01 1n1jA 93 7.61e+01 a.22.1.3 79813 1iow 306 7.62e+01 1iow c.30.1.2,d.142.1.1 31713,41481 2f66C 82 7.65e+01 2bc4A 211 7.72e+01 2ffwA 78 7.96e+01 1zavU 30 8.01e+01 1fr3A 67 8.17e+01 1fr3A b.40.6.1 25436 1n1jB 97 8.36e+01 a.22.1.3 79814 1y5oA 115 8.53e+01 1l8dA 112 8.61e+01 h.4.12.1 73687 1tgrA 52 8.62e+01 1s35A 214 8.67e+01 a.7.1.1,a.7.1.1 98420,98421 1mv8A 436 8.82e+01 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1s7mA 174 8.84e+01 b.144.1.1 98649 1gheA 177 8.94e+01 d.108.1.1 76222 1nt2B 258 8.97e+01 a.183.1.1 86150