Best Alignments for T0335

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1t95A/T0335-1t95A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t95A/T0335-1t95A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6380e-011.41e-12 a.5.8.1
d.235.1.2
d.58.11.3
1t3wA/T0335-1t3wA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t3wA/T0335-1t3wA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3028e+009.94e-04
2au5A/T0335-2au5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2au5A/T0335-2au5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4569e+005.76e-07
1a7w/T0335-1a7w-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1a7w/T0335-1a7w-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4975e+002.07e-07 1a7w a.22.1.2
1xhdA/T0335-1xhdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xhdA/T0335-1xhdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6547e+005.34e-06
1avsA/T0335-1avsA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1avsA/T0335-1avsA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6596e+002.21e-08 1cll a.39.1.5
1wdtA/T0335-1wdtA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wdtA/T0335-1wdtA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6639e+002.64e-05
2beqD/T0335-2beqD-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2beqD/T0335-2beqD-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8319e+001.35e-04
1m1eB/T0335-1m1eB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1m1eB/T0335-1m1eB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3186e+005.48e-07 a.161.1.1
2gboA/T0335-2gboA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gboA/T0335-2gboA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4933e+004.34e-08

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001