# TARGET T0335 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0335.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 10.373 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.028 0.009 0.012 0.139 0.142 0.670 2 I 0.041 0.017 0.014 0.362 0.121 0.445 3 S 0.026 0.011 0.014 0.565 0.084 0.300 4 N 0.004 0.002 0.013 0.912 0.028 0.042 5 A 0.003 0.001 0.010 0.959 0.013 0.015 6 K 0.001 0.001 0.003 0.987 0.003 0.005 7 I 0.001 0.001 0.001 0.996 0.001 0.002 8 A 0.001 0.001 0.001 0.995 0.002 0.001 9 R 0.001 0.001 0.001 0.996 0.001 0.001 10 I 0.001 0.001 0.001 0.997 0.001 0.001 11 N 0.001 0.001 0.001 0.997 0.001 0.001 12 E 0.001 0.001 0.001 0.997 0.001 0.001 13 L 0.001 0.001 0.001 0.997 0.001 0.002 14 A 0.001 0.001 0.001 0.998 0.001 0.001 15 A 0.001 0.001 0.002 0.996 0.001 0.001 16 K 0.001 0.001 0.002 0.993 0.003 0.001 17 A 0.001 0.001 0.005 0.981 0.010 0.003 18 K 0.001 0.001 0.009 0.948 0.027 0.014 19 A 0.001 0.001 0.020 0.779 0.094 0.105 20 G 0.003 0.003 0.019 0.108 0.222 0.646 21 V 0.014 0.017 0.020 0.023 0.192 0.735 22 I 0.035 0.043 0.004 0.013 0.169 0.737 23 T 0.010 0.006 0.001 0.014 0.072 0.897 24 E 0.001 0.001 0.008 0.981 0.006 0.006 25 E 0.001 0.001 0.012 0.981 0.005 0.002 26 E 0.001 0.001 0.007 0.988 0.004 0.001 27 K 0.001 0.001 0.002 0.989 0.003 0.006 28 A 0.001 0.001 0.001 0.999 0.001 0.001 29 E 0.001 0.001 0.001 0.999 0.001 0.001 30 Q 0.001 0.001 0.001 0.999 0.001 0.001 31 Q 0.001 0.001 0.001 0.999 0.001 0.001 32 K 0.001 0.001 0.001 0.999 0.001 0.001 33 L 0.001 0.001 0.001 0.999 0.001 0.001 34 R 0.001 0.001 0.001 0.999 0.001 0.001 35 Q 0.001 0.001 0.001 0.999 0.001 0.001 36 E 0.001 0.001 0.001 0.998 0.001 0.001 37 Y 0.001 0.001 0.001 0.997 0.001 0.001 38 L 0.001 0.001 0.001 0.997 0.001 0.001 39 K 0.001 0.001 0.001 0.997 0.001 0.001 40 G 0.001 0.001 0.003 0.992 0.003 0.003 41 F 0.001 0.001 0.003 0.989 0.004 0.004 42 R 0.001 0.001 0.004 0.989 0.004 0.003 43 S 0.001 0.001 0.004 0.987 0.005 0.003 44 S 0.001 0.001 0.006 0.965 0.009 0.018 45 M 0.001 0.001 0.010 0.957 0.012 0.020 46 K 0.005 0.001 0.019 0.929 0.032 0.015 47 N 0.011 0.001 0.028 0.866 0.065 0.029 48 T 0.024 0.003 0.051 0.713 0.086 0.124 49 L 0.055 0.005 0.113 0.634 0.147 0.046 50 K 0.100 0.003 0.092 0.438 0.271 0.096 51 S 0.153 0.002 0.052 0.312 0.273 0.209 52 V 0.772 0.008 0.005 0.043 0.083 0.090 53 K 0.940 0.004 0.001 0.008 0.011 0.037 54 I 0.971 0.004 0.001 0.002 0.006 0.015 55 I 0.858 0.013 0.001 0.003 0.025 0.101 56 D 0.211 0.011 0.002 0.002 0.702 0.073 57 P 0.007 0.001 0.026 0.003 0.945 0.018 58 E 0.002 0.002 0.033 0.005 0.947 0.012 59 G 0.006 0.012 0.031 0.002 0.942 0.007 60 N 0.034 0.026 0.060 0.019 0.546 0.314 61 D 0.085 0.124 0.101 0.054 0.419 0.217 62 V 0.059 0.048 0.023 0.065 0.462 0.343 63 T 0.025 0.014 0.002 0.058 0.141 0.760 64 P 0.001 0.001 0.015 0.963 0.013 0.009 65 E 0.001 0.001 0.010 0.986 0.003 0.001 66 K 0.001 0.001 0.018 0.973 0.007 0.001 67 L 0.002 0.001 0.007 0.973 0.008 0.008 68 K 0.002 0.001 0.004 0.983 0.005 0.006 69 R 0.002 0.001 0.004 0.982 0.006 0.005 70 E 0.002 0.001 0.005 0.974 0.011 0.008 71 Q 0.002 0.001 0.010 0.949 0.024 0.014 72 R 0.003 0.001 0.016 0.927 0.032 0.021 73 N 0.003 0.002 0.038 0.778 0.092 0.086 74 N 0.007 0.003 0.047 0.339 0.206 0.399 75 K 0.010 0.007 0.029 0.115 0.216 0.622 76 L 0.020 0.023 0.010 0.058 0.157 0.733 77 H 0.011 0.005 0.001 0.011 0.063 0.908