# TARGET T0335 # Using neural net dunbrack-30pc-1763-t2k-thin90-IDGaaH13-3-13-7-13-9-13-11-t2c3-n_notor2-from-empty.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 n_notor2 ) # The input amino acid frequencies were determined from # alignment T0335.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 10.373 # Pos AA G H I P A B S F J M N 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.203 0.099 0.017 0.014 0.009 0.012 0.039 0.008 0.001 0.004 0.595 2 I 0.108 0.078 0.022 0.020 0.019 0.026 0.139 0.006 0.001 0.007 0.575 3 S 0.055 0.053 0.007 0.011 0.008 0.014 0.179 0.003 0.001 0.004 0.667 4 N 0.034 0.100 0.003 0.011 0.004 0.007 0.091 0.002 0.001 0.003 0.745 5 A 0.043 0.135 0.002 0.004 0.003 0.007 0.331 0.002 0.001 0.011 0.463 6 K 0.083 0.411 0.003 0.006 0.008 0.014 0.281 0.008 0.001 0.012 0.174 7 I 0.057 0.875 0.003 0.003 0.001 0.003 0.008 0.002 0.001 0.001 0.044 8 A 0.010 0.926 0.001 0.002 0.001 0.002 0.006 0.003 0.001 0.001 0.049 9 R 0.087 0.745 0.001 0.001 0.001 0.001 0.004 0.030 0.001 0.001 0.129 10 I 0.064 0.899 0.014 0.001 0.001 0.001 0.003 0.002 0.001 0.001 0.017 11 N 0.002 0.916 0.001 0.001 0.001 0.001 0.010 0.006 0.001 0.001 0.063 12 E 0.012 0.859 0.001 0.001 0.001 0.001 0.019 0.003 0.001 0.001 0.105 13 L 0.008 0.965 0.001 0.001 0.001 0.001 0.007 0.002 0.001 0.001 0.017 14 A 0.021 0.940 0.001 0.001 0.001 0.001 0.012 0.010 0.001 0.002 0.013 15 A 0.017 0.968 0.003 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.010 16 K 0.012 0.967 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.001 0.016 17 A 0.029 0.942 0.001 0.001 0.001 0.001 0.001 0.015 0.001 0.001 0.012 18 K 0.073 0.743 0.008 0.001 0.001 0.002 0.002 0.099 0.001 0.001 0.070 19 A 0.127 0.652 0.056 0.006 0.002 0.005 0.007 0.052 0.001 0.001 0.092 20 G 0.243 0.250 0.021 0.024 0.007 0.007 0.033 0.102 0.001 0.002 0.310 21 V 0.343 0.064 0.197 0.027 0.002 0.004 0.034 0.013 0.001 0.003 0.312 22 I 0.054 0.036 0.107 0.175 0.014 0.020 0.110 0.006 0.001 0.003 0.473 23 T 0.032 0.013 0.003 0.065 0.005 0.008 0.379 0.001 0.001 0.003 0.492 24 E 0.003 0.006 0.001 0.004 0.001 0.001 0.030 0.001 0.001 0.001 0.955 25 E 0.003 0.023 0.001 0.004 0.001 0.003 0.625 0.001 0.001 0.005 0.336 26 E 0.025 0.034 0.001 0.002 0.001 0.004 0.864 0.002 0.001 0.018 0.051 27 K 0.046 0.903 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.001 0.043 28 A 0.005 0.979 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.016 29 E 0.008 0.960 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.029 30 Q 0.034 0.945 0.001 0.001 0.001 0.001 0.001 0.009 0.001 0.001 0.011 31 Q 0.008 0.982 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.006 32 K 0.006 0.966 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.025 33 L 0.012 0.960 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.024 34 R 0.012 0.969 0.002 0.001 0.001 0.001 0.001 0.004 0.001 0.001 0.012 35 Q 0.010 0.972 0.002 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.011 36 E 0.016 0.940 0.001 0.001 0.001 0.001 0.001 0.008 0.001 0.001 0.035 37 Y 0.023 0.956 0.001 0.001 0.001 0.001 0.001 0.006 0.001 0.001 0.013 38 L 0.012 0.961 0.004 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.015 39 K 0.011 0.941 0.003 0.001 0.001 0.001 0.002 0.007 0.001 0.001 0.032 40 G 0.062 0.831 0.003 0.001 0.001 0.001 0.003 0.010 0.001 0.001 0.089 41 F 0.083 0.851 0.007 0.001 0.001 0.001 0.004 0.007 0.001 0.001 0.043 42 R 0.025 0.843 0.015 0.006 0.002 0.006 0.012 0.011 0.001 0.001 0.079 43 S 0.032 0.642 0.006 0.004 0.003 0.004 0.015 0.014 0.001 0.001 0.279 44 S 0.143 0.655 0.005 0.001 0.001 0.001 0.016 0.006 0.001 0.001 0.170 45 M 0.053 0.812 0.007 0.002 0.002 0.003 0.018 0.008 0.001 0.001 0.093 46 K 0.031 0.791 0.008 0.004 0.005 0.008 0.020 0.008 0.001 0.002 0.123 47 N 0.070 0.692 0.005 0.002 0.005 0.009 0.041 0.013 0.001 0.003 0.161 48 T 0.147 0.701 0.004 0.002 0.005 0.004 0.008 0.019 0.001 0.001 0.111 49 L 0.086 0.781 0.010 0.005 0.008 0.010 0.010 0.018 0.001 0.003 0.070 50 K 0.066 0.549 0.021 0.010 0.025 0.041 0.030 0.030 0.001 0.004 0.225 51 S 0.212 0.291 0.017 0.019 0.032 0.060 0.024 0.072 0.001 0.005 0.268 52 V 0.363 0.169 0.061 0.071 0.071 0.058 0.021 0.029 0.001 0.005 0.151 53 K 0.052 0.045 0.047 0.132 0.166 0.169 0.091 0.014 0.001 0.004 0.279 54 I 0.013 0.007 0.018 0.097 0.272 0.314 0.029 0.003 0.001 0.001 0.245 55 I 0.011 0.005 0.003 0.200 0.187 0.382 0.053 0.002 0.001 0.002 0.155 56 D 0.017 0.003 0.002 0.110 0.256 0.216 0.143 0.001 0.001 0.004 0.248 57 P 0.001 0.001 0.001 0.015 0.007 0.009 0.018 0.001 0.001 0.001 0.949 58 E 0.002 0.001 0.001 0.009 0.008 0.017 0.746 0.001 0.001 0.010 0.207 59 G 0.764 0.001 0.001 0.008 0.001 0.002 0.056 0.001 0.001 0.107 0.061 60 N 0.422 0.029 0.006 0.013 0.004 0.004 0.330 0.001 0.001 0.027 0.164 61 D 0.104 0.007 0.012 0.021 0.007 0.010 0.327 0.001 0.001 0.012 0.497 62 V 0.132 0.010 0.024 0.077 0.022 0.061 0.175 0.001 0.001 0.012 0.485 63 T 0.015 0.004 0.001 0.018 0.042 0.053 0.595 0.001 0.001 0.002 0.268 64 P 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.997 65 E 0.001 0.002 0.001 0.004 0.004 0.013 0.599 0.001 0.001 0.004 0.372 66 K 0.147 0.014 0.001 0.004 0.002 0.009 0.616 0.001 0.001 0.035 0.172 67 L 0.120 0.779 0.001 0.012 0.001 0.002 0.006 0.002 0.001 0.001 0.076 68 K 0.033 0.869 0.001 0.003 0.001 0.003 0.005 0.002 0.001 0.001 0.084 69 R 0.060 0.814 0.001 0.001 0.001 0.001 0.003 0.004 0.001 0.001 0.116 70 E 0.059 0.843 0.001 0.001 0.001 0.001 0.001 0.012 0.001 0.001 0.083 71 Q 0.052 0.880 0.003 0.001 0.002 0.002 0.004 0.016 0.001 0.001 0.039 72 R 0.061 0.781 0.012 0.001 0.002 0.005 0.009 0.008 0.001 0.001 0.120 73 N 0.078 0.747 0.006 0.004 0.004 0.008 0.010 0.025 0.001 0.001 0.118 74 N 0.223 0.448 0.009 0.004 0.004 0.004 0.014 0.030 0.001 0.002 0.263 75 K 0.245 0.213 0.039 0.007 0.007 0.007 0.059 0.033 0.001 0.006 0.384 76 L 0.150 0.115 0.135 0.021 0.013 0.019 0.081 0.012 0.001 0.007 0.448 77 H 0.051 0.049 0.013 0.044 0.027 0.032 0.154 0.007 0.001 0.004 0.619