# TARGET T0335 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0335.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 10.373 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.001 0.001 0.005 0.001 0.001 0.991 2 I 0.012 0.019 0.008 0.202 0.005 0.027 0.728 3 S 0.008 0.004 0.021 0.507 0.056 0.075 0.328 4 N 0.003 0.001 0.030 0.784 0.035 0.079 0.070 5 A 0.002 0.001 0.017 0.900 0.023 0.026 0.031 6 K 0.001 0.001 0.006 0.961 0.005 0.010 0.016 7 I 0.001 0.001 0.001 0.985 0.003 0.002 0.007 8 A 0.001 0.001 0.001 0.990 0.002 0.004 0.003 9 R 0.001 0.001 0.001 0.988 0.001 0.008 0.001 10 I 0.001 0.001 0.001 0.993 0.001 0.004 0.001 11 N 0.001 0.001 0.001 0.989 0.001 0.007 0.001 12 E 0.001 0.001 0.001 0.978 0.001 0.017 0.002 13 L 0.001 0.001 0.005 0.949 0.002 0.037 0.006 14 A 0.001 0.001 0.010 0.882 0.006 0.083 0.018 15 A 0.001 0.001 0.020 0.750 0.016 0.164 0.048 16 K 0.005 0.003 0.044 0.624 0.056 0.125 0.144 17 A 0.008 0.004 0.080 0.561 0.059 0.145 0.143 18 K 0.010 0.007 0.078 0.481 0.117 0.147 0.160 19 A 0.012 0.008 0.139 0.276 0.116 0.301 0.148 20 G 0.015 0.003 0.078 0.117 0.195 0.438 0.154 21 V 0.024 0.011 0.040 0.055 0.174 0.250 0.445 22 I 0.018 0.034 0.002 0.011 0.198 0.012 0.725 23 T 0.004 0.012 0.001 0.006 0.019 0.001 0.958 24 E 0.001 0.001 0.014 0.966 0.001 0.016 0.002 25 E 0.001 0.001 0.028 0.956 0.001 0.013 0.001 26 E 0.001 0.001 0.012 0.980 0.001 0.004 0.003 27 K 0.001 0.001 0.001 0.994 0.001 0.004 0.001 28 A 0.001 0.001 0.001 0.990 0.001 0.009 0.001 29 E 0.001 0.001 0.001 0.979 0.001 0.017 0.002 30 Q 0.001 0.001 0.001 0.985 0.001 0.008 0.004 31 Q 0.001 0.001 0.001 0.985 0.001 0.013 0.001 32 K 0.001 0.001 0.001 0.969 0.001 0.029 0.001 33 L 0.001 0.001 0.001 0.962 0.001 0.031 0.005 34 R 0.001 0.001 0.001 0.989 0.001 0.006 0.003 35 Q 0.001 0.001 0.001 0.995 0.001 0.003 0.001 36 E 0.001 0.001 0.001 0.991 0.001 0.008 0.001 37 Y 0.001 0.001 0.001 0.989 0.001 0.009 0.001 38 L 0.001 0.001 0.001 0.994 0.001 0.004 0.001 39 K 0.001 0.001 0.001 0.993 0.001 0.006 0.001 40 G 0.001 0.001 0.001 0.987 0.001 0.012 0.001 41 F 0.001 0.001 0.002 0.985 0.001 0.011 0.002 42 R 0.001 0.001 0.002 0.985 0.001 0.010 0.002 43 S 0.001 0.001 0.001 0.969 0.001 0.028 0.001 44 S 0.001 0.001 0.002 0.948 0.002 0.042 0.005 45 M 0.001 0.001 0.005 0.965 0.002 0.021 0.007 46 K 0.002 0.001 0.018 0.929 0.008 0.033 0.009 47 N 0.004 0.001 0.039 0.845 0.009 0.094 0.009 48 T 0.009 0.003 0.067 0.673 0.029 0.188 0.033 49 L 0.048 0.012 0.090 0.434 0.100 0.129 0.186 50 K 0.083 0.003 0.073 0.130 0.243 0.318 0.150 51 S 0.281 0.006 0.065 0.119 0.115 0.290 0.124 52 V 0.578 0.006 0.010 0.043 0.028 0.016 0.320 53 K 0.842 0.011 0.006 0.022 0.012 0.004 0.103 54 I 0.912 0.005 0.002 0.009 0.007 0.004 0.062 55 I 0.734 0.049 0.002 0.007 0.052 0.007 0.149 56 D 0.097 0.007 0.001 0.001 0.054 0.001 0.840 57 P 0.003 0.001 0.015 0.002 0.091 0.857 0.031 58 E 0.001 0.003 0.014 0.001 0.053 0.915 0.013 59 G 0.011 0.014 0.073 0.004 0.485 0.192 0.222 60 N 0.024 0.034 0.052 0.009 0.142 0.251 0.487 61 D 0.070 0.192 0.036 0.005 0.163 0.185 0.350 62 V 0.066 0.112 0.012 0.007 0.244 0.042 0.517 63 T 0.023 0.032 0.002 0.008 0.131 0.009 0.794 64 P 0.001 0.001 0.048 0.894 0.005 0.037 0.015 65 E 0.001 0.001 0.029 0.947 0.003 0.018 0.003 66 K 0.001 0.001 0.032 0.950 0.002 0.009 0.006 67 L 0.001 0.001 0.010 0.967 0.002 0.008 0.010 68 K 0.002 0.001 0.006 0.962 0.003 0.017 0.010 69 R 0.001 0.001 0.007 0.953 0.004 0.028 0.006 70 E 0.002 0.001 0.007 0.933 0.006 0.034 0.017 71 Q 0.006 0.003 0.015 0.849 0.017 0.056 0.054 72 R 0.007 0.004 0.025 0.736 0.024 0.141 0.063 73 N 0.005 0.002 0.032 0.591 0.037 0.253 0.080 74 N 0.006 0.003 0.043 0.339 0.148 0.235 0.227 75 K 0.010 0.008 0.036 0.184 0.168 0.299 0.296 76 L 0.012 0.012 0.013 0.047 0.030 0.057 0.829 77 H 0.001 0.001 0.001 0.002 0.002 0.001 0.993