# TARGET T0335 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0335.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 10.373 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.460 0.093 0.154 0.136 0.038 0.032 0.043 0.019 0.016 0.007 0.001 2 I 0.454 0.160 0.185 0.122 0.013 0.030 0.010 0.001 0.020 0.004 0.001 3 S 0.436 0.122 0.298 0.052 0.028 0.022 0.009 0.002 0.012 0.019 0.001 4 N 0.922 0.003 0.013 0.028 0.003 0.004 0.017 0.007 0.001 0.002 0.001 5 A 0.931 0.004 0.010 0.040 0.001 0.002 0.005 0.005 0.001 0.001 0.001 6 K 0.967 0.003 0.004 0.022 0.001 0.002 0.001 0.001 0.001 0.001 0.001 7 I 0.982 0.004 0.008 0.003 0.001 0.002 0.001 0.001 0.001 0.001 0.001 8 A 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 9 R 0.991 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 10 I 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 N 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 E 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 L 0.994 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 A 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 A 0.975 0.001 0.001 0.022 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 K 0.973 0.003 0.008 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 A 0.913 0.005 0.008 0.065 0.002 0.002 0.003 0.001 0.001 0.001 0.001 18 K 0.878 0.015 0.020 0.063 0.003 0.005 0.010 0.002 0.004 0.001 0.001 19 A 0.548 0.014 0.045 0.348 0.005 0.006 0.025 0.004 0.003 0.001 0.001 20 G 0.313 0.028 0.121 0.201 0.045 0.013 0.093 0.156 0.013 0.018 0.001 21 V 0.255 0.114 0.241 0.204 0.033 0.042 0.076 0.007 0.022 0.004 0.001 22 I 0.040 0.171 0.631 0.060 0.016 0.066 0.005 0.001 0.008 0.001 0.001 23 T 0.008 0.141 0.715 0.001 0.103 0.016 0.001 0.001 0.011 0.004 0.001 24 E 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 E 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 E 0.990 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 K 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 E 0.986 0.001 0.001 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 Q 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 31 Q 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 32 K 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 33 L 0.992 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 34 R 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 35 Q 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 36 E 0.990 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 37 Y 0.981 0.001 0.001 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 L 0.989 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 K 0.990 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 G 0.978 0.001 0.001 0.016 0.001 0.001 0.001 0.004 0.001 0.001 0.001 41 F 0.940 0.001 0.003 0.053 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 R 0.969 0.003 0.006 0.016 0.001 0.002 0.002 0.001 0.001 0.001 0.001 43 S 0.965 0.003 0.008 0.018 0.002 0.001 0.002 0.001 0.001 0.001 0.001 44 S 0.898 0.004 0.007 0.074 0.004 0.004 0.003 0.002 0.003 0.001 0.001 45 M 0.957 0.002 0.002 0.037 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 K 0.982 0.001 0.003 0.010 0.001 0.001 0.002 0.001 0.001 0.001 0.001 47 N 0.923 0.002 0.003 0.064 0.001 0.001 0.004 0.001 0.001 0.001 0.001 48 T 0.780 0.007 0.008 0.193 0.001 0.004 0.004 0.001 0.002 0.001 0.001 49 L 0.438 0.093 0.314 0.067 0.004 0.057 0.003 0.001 0.023 0.001 0.001 50 K 0.816 0.005 0.006 0.169 0.001 0.001 0.001 0.001 0.001 0.001 0.001 51 S 0.147 0.239 0.070 0.250 0.213 0.010 0.053 0.007 0.010 0.001 0.001 52 V 0.031 0.645 0.215 0.027 0.029 0.015 0.001 0.001 0.035 0.001 0.001 53 K 0.021 0.666 0.173 0.005 0.024 0.051 0.002 0.001 0.057 0.001 0.001 54 I 0.007 0.580 0.330 0.005 0.015 0.043 0.001 0.001 0.018 0.001 0.001 55 I 0.012 0.600 0.256 0.023 0.036 0.050 0.002 0.001 0.020 0.001 0.001 56 D 0.001 0.096 0.760 0.001 0.035 0.062 0.001 0.001 0.045 0.001 0.001 57 P 0.982 0.001 0.002 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 58 E 0.319 0.002 0.013 0.658 0.001 0.001 0.005 0.001 0.001 0.001 0.001 59 G 0.069 0.004 0.102 0.170 0.015 0.004 0.139 0.457 0.003 0.036 0.001 60 N 0.396 0.040 0.395 0.084 0.011 0.009 0.040 0.009 0.004 0.011 0.001 61 D 0.150 0.035 0.318 0.285 0.016 0.077 0.067 0.025 0.020 0.006 0.001 62 V 0.159 0.222 0.464 0.109 0.016 0.024 0.002 0.001 0.004 0.001 0.001 63 T 0.034 0.242 0.543 0.008 0.070 0.037 0.001 0.001 0.059 0.005 0.001 64 P 0.967 0.001 0.025 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 65 E 0.987 0.001 0.002 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 66 K 0.981 0.001 0.001 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 67 L 0.974 0.001 0.005 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 68 K 0.979 0.002 0.004 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 69 R 0.976 0.003 0.004 0.013 0.001 0.001 0.001 0.001 0.001 0.001 0.001 70 E 0.939 0.004 0.006 0.045 0.002 0.001 0.001 0.001 0.001 0.001 0.001 71 Q 0.880 0.009 0.015 0.072 0.002 0.004 0.008 0.003 0.005 0.001 0.001 72 R 0.861 0.021 0.023 0.065 0.004 0.007 0.013 0.002 0.002 0.002 0.001 73 N 0.658 0.020 0.034 0.214 0.007 0.014 0.041 0.004 0.006 0.002 0.001 74 N 0.282 0.035 0.063 0.397 0.019 0.024 0.136 0.022 0.020 0.002 0.001 75 K 0.329 0.067 0.114 0.145 0.020 0.039 0.242 0.013 0.026 0.004 0.001 76 L 0.286 0.157 0.250 0.215 0.013 0.045 0.011 0.002 0.018 0.001 0.001 77 H 0.197 0.167 0.241 0.160 0.086 0.037 0.048 0.018 0.020 0.025 0.001