# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xhdA 173 5.07e-02 1t3wA 148 5.56e-02 1v3wA 173 3.87e-01 b.81.1.5 100291 2au5A 139 4.08e-01 1lj9A 144 4.49e-01 a.4.5.28 78035 1ihp 438 5.98e-01 1ihp c.60.1.2 33993 2beqD 48 6.95e-01 1wdtA 665 7.85e-01 2fbhA 146 9.47e-01 1ofcX 304 9.86e-01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 2gboA 104 1.34e+00 1y96B 85 1.43e+00 1t95A 240 1.54e+00 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 2a6sA 84 2.05e+00 1nrlA 316 2.12e+00 a.123.1.1 92091 2ap3A 199 2.18e+00 2aucA 126 2.24e+00 1ic8A 194 2.34e+00 a.4.1.1,a.35.1.1 76740,76741 1l8dA 112 2.43e+00 h.4.12.1 73687 1mvwC 147 2.67e+00 i.15.1.1 79525 1f32A 149 2.77e+00 1f32A d.62.1.1 39539 2fu2A 102 2.85e+00 1wy1A 172 3.33e+00 1sknP 92 3.38e+00 1sknP a.37.1.1 17127 1avsA 90 3.50e+00 1cll a.39.1.5 17226 1br1B 150 3.89e+00 1wdcC a.39.1.5 17309 1wmiB 67 3.89e+00 1sczA 233 4.05e+00 c.43.1.1 98802 1q6cA 495 4.07e+00 c.1.8.1 95970 1eijA 80 4.12e+00 1eijA a.5.6.1 16298 1c3jA 351 4.58e+00 1c3jA c.87.1.1 35459 1p9qC 256 4.78e+00 a.5.8.1,d.235.1.2,d.58.11.3 104093,104094,104095 1v1dA 31 4.99e+00 1v3hA 495 5.00e+00 c.1.8.1 108303 2bezF 42 5.06e+00 2c2aA 258 5.18e+00 2fueA 262 5.38e+00 2c5kT 95 5.55e+00 1wlqC 201 6.05e+00 a.4.5.52 109400 1hwtC 81 6.16e+00 1hwtC g.38.1.1,h.1.3.1 45085,45518 1tn4 159 6.49e+00 1ncx a.39.1.5 17248 2amyA 246 6.57e+00 1wdpA 495 6.63e+00 1byb 495 6.69e+00 1byb c.1.8.1 28790 1yy7A 213 6.95e+00 1tgrA 52 7.18e+00 1olmA 403 7.34e+00 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 2bskB 90 7.40e+00 1o6uA 403 7.51e+00 a.5.3.1,b.132.1.1,c.13.1.1 92589,92590,92591 1r1hA 696 7.61e+00 d.92.1.4 104756 1z5lA 285 7.66e+00 1qwoA 442 8.22e+00 c.60.1.2 104620 1dpsA 167 8.72e+00 1dpsA a.25.1.1 16716 2aukA 190 8.76e+00 1jixA 351 8.80e+00 1c3jA c.87.1.1 63081 2ajfE 180 9.20e+00 1ijgA 309 9.92e+00 1fouA e.27.1.1 62493 1eca 136 1.01e+01 1flp a.1.1.2 15209 1h8eA 510 1.01e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1tmxA 293 1.04e+01 2dd8S 202 1.05e+01 1lt3A 240 1.07e+01 1lt3A d.166.1.1 42230 1dp3A 55 1.12e+01 1dp3A a.55.1.2 59128 1o6dA 163 1.14e+01 c.116.1.3 92567 1hfeS 123 1.16e+01 1hfeS a.137.4.1 19640 1wmhA 89 1.16e+01 1dmtA 696 1.16e+01 1dmtA d.92.1.4 40296 2es4D 332 1.17e+01 1yzmA 51 1.21e+01 1e79A 510 1.24e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 18269,26434,32314 1ic2A 81 1.33e+01 h.1.5.1 62247 2akrA 285 1.36e+01 1eumA 165 1.39e+01 1eumA a.25.1.1 59507 1winA 143 1.44e+01 1ggzA 148 1.45e+01 a.39.1.5 70176 2fsjA 346 1.48e+01 1useA 45 1.50e+01 1czqA 46 1.61e+01 1czqA h.3.2.1 45720 1n4kA 381 1.68e+01 a.118.22.1,b.42.6.1 79992,79993 1r44A 202 1.70e+01 d.65.1.4 104787 2fji1 399 1.73e+01 1kx5B 102 1.89e+01 a.22.1.1 77594 1n1jA 93 1.90e+01 a.22.1.3 79813 1sfxA 109 1.91e+01 a.4.5.50 105505 1ockA 412 1.92e+01 c.117.1.1 86802 2fm9A 215 1.97e+01 1v30A 124 1.97e+01 1gs9A 165 2.01e+01 a.24.1.1 83313 2ck3A 510 2.11e+01 2f3yA 148 2.12e+01 1lnwA 147 2.14e+01 a.4.5.28 78104 1m1eB 81 2.15e+01 a.161.1.1 78400 1or3A 165 2.18e+01 1nfn a.24.1.1 16522 2gb7A 305 2.19e+01 1fr2A 86 2.21e+01 a.28.2.1 83256 1fy7A 278 2.22e+01 1fy7A d.108.1.1 40817 1tjlA 151 2.25e+01 a.2.14.1,g.39.1.13 107027,107028 1go3F 107 2.31e+01 a.60.8.2 65407 1q0sA 259 2.32e+01 c.66.1.28 95509 1s72V 71 2.35e+01 a.2.2.1 105341 1uw4A 91 2.38e+01 d.58.7.4 100071 1vqoV 71 2.38e+01 1tzyD 103 2.41e+01 a.22.1.1 107533 1qvbA 481 2.46e+01 1qvbA c.1.8.4 28983 1upvA 257 2.47e+01 1w7jB 151 2.54e+01 2cq8A 110 2.55e+01 1f46A 140 2.59e+01 1f46A d.129.4.1 59643 1wdcC 156 2.62e+01 1wdcC a.39.1.5 17317 1pq9A 253 2.65e+01 a.123.1.1 95004 1v77A 212 2.67e+01 c.6.3.2 108402 2erbA 125 2.67e+01 1lghB 45 2.73e+01 1lghB f.3.1.1 43734 1siqA 392 2.74e+01 a.29.3.1,e.6.1.1 105585,105586 1e2uA 553 2.78e+01 1e1dA e.26.1.1 43362 1iwmA 186 2.79e+01 b.125.1.2 83758 1nkpA 88 2.81e+01 a.38.1.1 80573 1fcqA 350 2.89e+01 c.1.8.9 65006 2es9A 115 2.91e+01 1bj7 156 2.92e+01 1bj7 b.60.1.1 27113 2aexA 346 2.92e+01 1rgxA 114 2.98e+01 g.77.1.1 104932 2c4jA 218 2.99e+01 2a26A 50 3.01e+01 1mvwB 145 3.01e+01 i.15.1.1 79524 1jnmA 62 3.03e+01 h.1.3.1 84181 1snnA 227 3.07e+01 d.115.1.2 105821 1zavU 30 3.09e+01 1on2A 142 3.09e+01 a.4.5.24,a.76.1.1 87103,87104 1nt2B 258 3.10e+01 a.183.1.1 86150 1yz1A 174 3.10e+01 1iuqA 367 3.11e+01 c.112.1.1 90703 1qo7A 394 3.12e+01 1qo7A c.69.1.11 34697 1p4cA 380 3.18e+01 c.1.4.1 94100 2b1eA 564 3.22e+01 1yruB 74 3.29e+01 1pvyA 227 3.33e+01 d.115.1.2 95195 1vd3A 217 3.34e+01 2ajrA 331 3.37e+01 1b74A 254 3.40e+01 1b74A c.78.2.1,c.78.2.1 35264,35265 1xhnA 184 3.42e+01 1ltsC 41 3.44e+01 1ltsC 1g8iA 190 3.44e+01 1rec a.39.1.5 60363 1fjgK 129 3.45e+01 1fjfK c.55.4.1 33733 2af4C 333 3.46e+01 4xis 387 3.46e+01 4xis c.1.15.3 29421 1dd3C 32 3.49e+01 1dd3C a.108.1.1 19033 2gv5C 73 3.55e+01 1afwA 393 3.62e+01 1afwA c.95.1.1,c.95.1.1 35900,35901 1emvA 86 3.65e+01 1cei a.28.2.1 16944 1gntA 553 3.70e+01 e.26.1.1 70290 1aj8A 371 3.77e+01 1aj8A a.103.1.1 18900 1j30A 144 3.79e+01 a.25.1.1 90806 1top 162 3.80e+01 1ncx a.39.1.5 17223 1z0pA 84 3.84e+01 2h1nA 567 3.84e+01 3xis 387 3.86e+01 4xis c.1.15.3 29423 1sesA 421 3.90e+01 1sesA a.2.7.1,d.104.1.1 15710,40710 1icxA 155 3.92e+01 d.129.3.1 71191 1sszA 34 3.96e+01 j.35.1.1 105999 2dc3A 193 3.98e+01 2ax9A 256 3.98e+01 1iomA 377 4.01e+01 a.103.1.1 83698 1g4yR 148 4.07e+01 1cll a.39.1.5 60252 1z3iX 644 4.14e+01 1pi1A 185 4.16e+01 a.29.7.1 94699 1z8uA 102 4.18e+01 1vm8A 534 4.26e+01 1ql3A 99 4.28e+01 1ycc a.3.1.1 15822 1vd2A 89 4.30e+01 d.15.2.2 108517 1tw9A 206 4.33e+01 a.45.1.1,c.47.1.5 107381,107382 2bm8A 236 4.36e+01 1nmeA 146 4.38e+01 c.17.1.1 85874 1wq3A 322 4.40e+01 1qy6A 274 4.48e+01 b.47.1.1 96574 1xfxO 149 4.51e+01 2ax8A 256 4.52e+01 1lqaA 346 4.57e+01 c.1.7.1 84674 1y01A 102 4.62e+01 1y4oA 104 4.66e+01 1okrA 123 4.69e+01 a.4.5.39 93269 2h4uA 145 4.72e+01 1pcfA 66 4.78e+01 1pcfA d.18.1.1 38142 1b0nB 57 4.81e+01 1b0nB a.34.1.1 17002 1n97A 389 4.96e+01 a.104.1.1 80335 1imt 80 4.96e+01 1imt g.3.10.1,g.3.10.1 44201,44202 2f6mA 65 4.98e+01 1k1vA 41 5.10e+01 a.37.1.1 71999 1hq3D 103 5.20e+01 1aoiB a.22.1.1 16464 1ji8A 111 5.23e+01 d.203.1.1 66733 1f74A 293 5.26e+01 1nal3 c.1.10.1 29079 2fikA 287 5.27e+01 1lm4A 194 5.34e+01 d.167.1.1 84626 1mw9X 592 5.50e+01 e.10.1.1 91480 1qsoA 149 5.54e+01 1qsmA d.108.1.1 40812 1souA 194 5.58e+01 c.124.1.6 105858 1wlxA 129 5.69e+01 1f02T 66 5.73e+01 1f02T j.67.1.1 46360 1dekA 241 5.75e+01 1dekA c.37.1.1 31842 1z9bA 135 5.78e+01 1yf3A 259 5.79e+01 1jboB 172 5.80e+01 a.1.1.3 84151 2aaxA 275 5.85e+01 1ykiA 217 5.96e+01 1vjvA 415 5.98e+01 d.3.1.9 108632 1q4rA 112 6.06e+01 d.58.4.4 95823 1owfA 99 6.07e+01 a.55.1.1 87487 1u2eA 289 6.11e+01 1xzoA 174 6.16e+01 1allA 160 6.18e+01 1qgwC a.1.1.3 15647 1e5pA 151 6.19e+01 1bj7 b.60.1.1 59272 1iruK 201 6.20e+01 d.153.1.4 71362 2chgA 226 6.25e+01 1uiuA 502 6.25e+01 c.94.1.1 99434 2co5A 99 6.30e+01 1lj2A 110 6.35e+01 h.1.13.2 73926 1zroA 602 6.38e+01 1eyhA 144 6.39e+01 1eduA a.118.9.1 19214 1wq6A 72 6.40e+01 1t7rA 269 6.40e+01 a.123.1.1 106635 1oe9A 795 6.45e+01 b.34.3.1,c.37.1.9 92792,92793 1a41 234 6.45e+01 1a41 d.163.1.2 42174 1uz3A 102 6.49e+01 2b95A 106 6.62e+01 1rkeA 262 6.65e+01 a.24.9.1,a.24.9.1 97608,97609 1ukcA 522 6.69e+01 c.69.1.17 107911 1yzyA 413 6.76e+01 2occD 147 6.78e+01 1ocrD f.23.1.1 43521 6rlxA 24 6.91e+01 1tdpA 111 6.92e+01 a.29.8.1 106781 1ow4A 129 6.98e+01 a.39.2.1 93628 2ax6A 256 7.06e+01 1ez3A 127 7.06e+01 1dn1B a.47.2.1 17768 1dtc 27 7.21e+01 j.7.1.1 46109 1a02F 56 7.26e+01 1a02F h.1.3.1 45534 1tuoA 464 7.33e+01 2cq2A 114 7.34e+01 1icrA 217 7.35e+01 1vfrA d.90.1.1 62274 1hn0A 1021 7.38e+01 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 2pia 321 7.39e+01 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1ns5A 155 7.40e+01 c.116.1.3 80705 1u9iA 519 7.41e+01 1k5nA 276 7.55e+01 b.1.1.2,d.19.1.1 77266,77267 1uedA 406 7.57e+01 a.104.1.1 99256 1m55A 197 7.60e+01 d.89.1.3 74469 1iow 306 7.61e+01 1iow c.30.1.2,d.142.1.1 31713,41481 1p42A 270 7.74e+01 d.14.1.7,d.14.1.7 87754,87755 1cpcB 172 7.76e+01 1qgwC a.1.1.3 15644 1gesA 450 7.82e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1l0bA 229 7.84e+01 c.15.1.3,c.15.1.3 73391,73392 1wphA 201 7.87e+01 2g09A 297 7.90e+01 1fzcA 87 7.94e+01 1fzcA h.1.8.1 45590 1babB 146 7.95e+01 1abwA a.1.1.2 15414 1uk5A 111 7.98e+01 a.7.7.1 99487 2czrA 226 8.03e+01 1ash 150 8.03e+01 1ash a.1.1.2 15622 1akhA 61 8.05e+01 1akhA a.4.1.1 15980 1v54D 147 8.07e+01 f.23.1.1 100325 1s9kD 53 8.09e+01 1kn1A 160 8.11e+01 a.1.1.3 77455 1y5iA 1246 8.11e+01 1rhs 296 8.16e+01 1rhs c.46.1.2,c.46.1.2 32703,32704 2cu5A 129 8.17e+01 1l7yA 94 8.19e+01 d.15.1.6 73676 1lvfA 110 8.20e+01 a.47.2.1 74280 1iioA 84 8.29e+01 a.39.4.1 66150 1em8B 112 8.29e+01 c.126.1.1 90458 1s0pA 176 8.33e+01 a.192.1.1 98300 1q16A 1247 8.34e+01 b.52.2.2,c.81.1.1 95546,95547 1pmzA 86 8.38e+01 a.39.1.10 104195 1xtnA 120 8.39e+01 1wu9A 80 8.41e+01 1xcrA 316 8.42e+01 2f9dP 43 8.52e+01 2b5dX 528 8.56e+01 1dpuA 99 8.60e+01 1dpuA a.4.5.16 16150 1oq9A 363 8.60e+01 a.25.1.2 87257 1cpq 129 8.61e+01 1cpq a.24.3.2 16556 1iakB 185 8.65e+01 1iakB b.1.1.2,d.19.1.1 21626,38200 1b68A 191 8.69e+01 1nfn a.24.1.1 59076 1utuA 108 8.69e+01 1tz9A 367 8.72e+01 c.1.15.6 107466 1xteA 154 8.76e+01 1tikA 213 8.78e+01 c.23.5.3 107003 1n00A 321 8.81e+01 a.65.1.1 85241 1irdB 146 8.94e+01 a.1.1.2 66287