# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hfeS 123 7.48e-01 1hfeS a.137.4.1 19640 2gboA 104 2.45e+00 1y96B 85 3.61e+00 1xhdA 173 3.98e+00 2a2fX 325 4.02e+00 1wdtA 665 4.18e+00 1ybxA 143 4.40e+00 1wmhA 89 6.77e+00 1qo7A 394 7.05e+00 1qo7A c.69.1.11 34697 2ghjA 118 8.26e+00 1dwkA 156 8.40e+00 1dw9A a.35.1.4,d.72.1.1 17075,39606 1icxA 155 8.60e+00 d.129.3.1 71191 1fjgL 135 8.88e+00 1fjfL b.40.4.5 25346 2vsgA 358 9.07e+00 2vsgA h.4.1.1 45780 2beqD 48 9.57e+00 1bg1A 722 9.70e+00 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 1vd2A 89 9.74e+00 d.15.2.2 108517 1grj 158 1.03e+01 1grj a.2.1.1,d.26.1.2 15691,38433 1mvwC 147 1.04e+01 i.15.1.1 79525 1hq3D 103 1.05e+01 1aoiB a.22.1.1 16464 2amyA 246 1.06e+01 1tzyD 103 1.09e+01 a.22.1.1 107533 1nu7D 282 1.19e+01 a.8.6.1,a.8.6.1 92191,92192 1y7qA 98 1.31e+01 2c5kT 95 1.45e+01 1vdlA 80 1.49e+01 a.5.2.1 108528 1xouA 192 1.50e+01 1nkd 65 1.55e+01 1nkd a.30.1.1 16974 1ofcX 304 1.61e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1cpq 129 1.64e+01 1cpq a.24.3.2 16556 2chgA 226 1.71e+01 2ezh 75 1.73e+01 2ezh a.4.1.2 16029 1k5nA 276 1.85e+01 b.1.1.2,d.19.1.1 77266,77267 1b67A 68 1.89e+01 1a7w a.22.1.2 16474 1j1jA 240 1.99e+01 a.118.16.1 90762 2dd8S 202 2.01e+01 1a7w 69 2.01e+01 1a7w a.22.1.2 16477 2ajfE 180 2.02e+01 1p9yA 121 2.03e+01 d.241.2.1 94402 2fueA 262 2.35e+01 1doi 128 2.54e+01 1awd d.15.4.1 37676 2aqaA 63 2.58e+01 1dp3A 55 2.59e+01 1dp3A a.55.1.2 59128 1lp3A 519 2.69e+01 b.121.5.2 74169 1dvoA 152 2.72e+01 1dvoA a.136.1.1 19623 1avsA 90 2.84e+01 1cll a.39.1.5 17226 1zs4A 83 3.02e+01 1mvwB 145 3.04e+01 i.15.1.1 79524 1t3wA 148 3.19e+01 1b74A 254 3.24e+01 1b74A c.78.2.1,c.78.2.1 35264,35265 1tjlA 151 3.24e+01 a.2.14.1,g.39.1.13 107027,107028 2bfdA 400 3.44e+01 1rfmA 344 3.49e+01 c.122.1.1 97385 1ic2A 81 3.50e+01 h.1.5.1 62247 1fltV 98 3.64e+01 1vpfA g.17.1.1 44751 1v3wA 173 3.80e+01 b.81.1.5 100291 2f6hX 419 3.81e+01 1keyA 235 3.87e+01 a.118.16.1 72389 1dd3C 32 3.92e+01 1dd3C a.108.1.1 19033 1zavU 30 4.06e+01 1y14B 171 4.08e+01 1br1B 150 4.30e+01 1wdcC a.39.1.5 17309 1u4nA 310 4.31e+01 1zvzA 279 4.44e+01 1ie9A 259 4.50e+01 1db1A a.123.1.1 62318 1yhfA 115 4.52e+01 1xzoA 174 4.57e+01 1tq4A 413 4.72e+01 c.37.1.8 107201 2aukA 190 4.74e+01 1r59O 505 4.75e+01 1uw4A 91 4.79e+01 d.58.7.4 100071 1uacH 114 4.85e+01 b.1.1.1 99132 1x7yA 400 4.93e+01 1olmA 403 4.98e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1o6uA 403 4.98e+01 a.5.3.1,b.132.1.1,c.13.1.1 92589,92590,92591 1j1xH 114 5.02e+01 b.1.1.1 77063 1n1jA 93 5.12e+01 a.22.1.3 79813 1ihp 438 5.33e+01 1ihp c.60.1.2 33993 1dxrH 258 5.41e+01 6prcH b.41.1.1,f.23.10.1 25456,43433 1n0qA 93 5.55e+01 k.37.1.1 79754 1vjvA 415 5.55e+01 d.3.1.9 108632 2fm9A 215 5.59e+01 1mkkA 96 5.60e+01 g.17.1.1 79240 2aucA 126 5.61e+01 2d68A 82 5.69e+01 1kn7A 78 5.74e+01 j.12.1.1 84413 1vqoB 338 5.76e+01 1w6uA 302 5.87e+01 2ahqA 76 5.87e+01 1wgmA 98 5.90e+01 1yzyA 413 6.09e+01 1ib8A 164 6.39e+01 b.38.2.1,d.52.4.1 71168,71169 1t3bA 211 6.50e+01 c.47.1.9,d.17.3.1 106341,106342 1q0sA 259 6.63e+01 c.66.1.28 95509 1x54A 434 6.65e+01 1vzsA 76 6.67e+01 f.45.1.1 108972 2ap3A 199 6.68e+01 1upvA 257 6.78e+01 1m1eB 81 6.84e+01 a.161.1.1 78400 2fsjA 346 6.88e+01 1cxpA 104 6.93e+01 1d2vA a.93.1.2 18695 1d2vA 104 6.93e+01 1d2vA a.93.1.2 18697 1ns5A 155 7.00e+01 c.116.1.3 80705 2cz1A 206 7.15e+01 1zfjA 491 7.15e+01 1ak5 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 2bg9A 370 7.21e+01 1vkuA 100 7.24e+01 a.28.1.1 108690 1s72B 338 7.30e+01 b.43.3.2 105320 2ahjA 206 7.31e+01 2ahjA d.149.1.1 41772 2ffwA 78 7.37e+01 1jnmA 62 7.41e+01 h.1.3.1 84181 1k92A 455 7.44e+01 c.26.2.1,d.210.1.1 68325,68326 1jeyB 565 7.46e+01 1jeqB b.131.1.2,c.62.1.4 90372,90373 1a2vA 655 7.46e+01 1a2vA b.30.2.1,d.17.2.1,d.17.2.1 24416,38059,38060 2es4D 332 7.50e+01 1ylxA 103 7.52e+01 1sszA 34 7.58e+01 j.35.1.1 105999 2c52B 59 7.83e+01 2bvpA 276 8.00e+01 2f23A 156 8.01e+01 1uwdA 103 8.02e+01 1txqB 86 8.12e+01 1z7mA 344 8.24e+01 2aobA 99 8.24e+01 1byb 495 8.27e+01 1byb c.1.8.1 28790 1f5vA 240 8.28e+01 1bkjA d.90.1.1 40255 2f6mA 65 8.33e+01 1ic8A 194 8.55e+01 a.4.1.1,a.35.1.1 76740,76741 1noyA 388 8.57e+01 1clqA c.55.3.5 33713 1wwcA 118 8.58e+01 1wwcA b.1.1.4 21778 1olsA 400 8.68e+01 c.36.1.11 93331 2gv5C 73 8.70e+01 1tw0A 157 8.71e+01 1jj2B 337 8.73e+01 1ffkB b.43.3.2 63086 1wmiB 67 8.81e+01 1kx5B 102 8.83e+01 a.22.1.1 77594 1iapA 211 8.83e+01 a.91.1.1 62119 1ut8A 291 8.90e+01 a.60.7.1,c.120.1.2 99908,99909 2byoA 207 8.94e+01