CreatePredAlphaCost pred_alpha2k alpha11 T0334.t2k.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha04 alpha11 T0334.t04.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha06 alpha11 T0334.t06.alpha.rdb 2 alpha alpha_prev sum SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 20 dry6.5 35 dry8 25 dry12 15 \ phobic_fit 3 \ sidechain 7 \ n_ca_c 20 bad_peptide 20 \ bystroff 5 \ soft_clashes 100 backbone_clashes 2 \ break 300 \ pred_alpha2k 2 \ pred_alpha04 2 \ pred_alpha06 2 \ hbond_geom 5 \ hbond_geom_backbone 10 \ hbond_geom_beta 50 \ hbond_geom_beta_pair 100 \ missing_atoms 1