Best Alignments for T0334

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2aqjA/T0334-2aqjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2aqjA/T0334-2aqjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.9545e-491.17e-279
1pn0A/T0334-1pn0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pn0A/T0334-1pn0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2681e-235.51e-127 c.3.1.2
c.47.1.10
d.16.1.2
1ryiA/T0334-1ryiA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ryiA/T0334-1ryiA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1831e-238.32e-126
1ykjA/T0334-1ykjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ykjA/T0334-1ykjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9339e-222.82e-128
1k0iA/T0334-1k0iA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1k0iA/T0334-1k0iA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.0005e-223.65e-121 c.3.1.2
d.16.1.2
1pj5A/T0334-1pj5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pj5A/T0334-1pj5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.0450e-221.35e-120 b.44.2.1
c.3.1.2
d.16.1.5
d.250.1.1
1el5A/T0334-1el5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1el5A/T0334-1el5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9869e-211.99e-112 1b3mA c.3.1.2
d.16.1.3
1zmdA/T0334-1zmdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zmdA/T0334-1zmdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.7201e-202.69e-92
1zk7A/T0334-1zk7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zk7A/T0334-1zk7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.1393e-163.70e-88
1c0pA/T0334-1c0pA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1c0pA/T0334-1c0pA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6637e-155.34e-84 1an9A c.4.1.2
d.16.1.3

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001