Best Alignments for T0334

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2aqjA/T0334-2aqjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2aqjA/T0334-2aqjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.7731e-443.33e-200
1zmdA/T0334-1zmdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zmdA/T0334-1zmdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.6175e-332.69e-92
1ryiA/T0334-1ryiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ryiA/T0334-1ryiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4172e-314.08e-104
1ykjA/T0334-1ykjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ykjA/T0334-1ykjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2161e-304.03e-121
1k0iA/T0334-1k0iA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1k0iA/T0334-1k0iA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.8004e-305.78e-120 c.3.1.2
d.16.1.2
1zk7A/T0334-1zk7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zk7A/T0334-1zk7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.8507e-293.70e-88
1el5A/T0334-1el5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1el5A/T0334-1el5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.7190e-284.21e-107 1b3mA c.3.1.2
d.16.1.3
1pn0A/T0334-1pn0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pn0A/T0334-1pn0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.5648e-271.19e-103 c.3.1.2
c.47.1.10
d.16.1.2
1pj5A/T0334-1pj5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pj5A/T0334-1pj5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.5763e-271.30e-94 b.44.2.1
c.3.1.2
d.16.1.5
d.250.1.1
1gesA/T0334-1gesA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gesA/T0334-1gesA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6249e-262.90e-92 3grs c.3.1.5
c.3.1.5
d.87.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001