Best Alignments for T0333

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2c1xA/T0333-2c1xA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2c1xA/T0333-2c1xA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4561e-261.05e-128
2acvA/T0333-2acvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2acvA/T0333-2acvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.6042e-261.50e-123
1f0kA/T0333-1f0kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1f0kA/T0333-1f0kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.2391e-252.28e-121 1f0kA c.87.1.2
1iirA/T0333-1iirA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1iirA/T0333-1iirA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.1388e-253.98e-151 1iirA c.87.1.5
1v4vA/T0333-1v4vA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1v4vA/T0333-1v4vA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5136e-162.11e-99 c.87.1.3
1rzuA/T0333-1rzuA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1rzuA/T0333-1rzuA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.2060e-122.84e-98 c.87.1.8
1pswA/T0333-1pswA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pswA/T0333-1pswA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.9270e-075.23e-56 c.87.1.7
2bfwA/T0333-2bfwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bfwA/T0333-2bfwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3095e-069.46e-51
1xv5A/T0333-1xv5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xv5A/T0333-1xv5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6381e-056.41e-68
1w78A/T0333-1w78A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1w78A/T0333-1w78A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.4633e-045.62e-34

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001