Best Alignments for T0333

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1iirA/T0333-1iirA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1iirA/T0333-1iirA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.0706e-263.98e-151 1iirA c.87.1.5
2c1xA/T0333-2c1xA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2c1xA/T0333-2c1xA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0591e-205.16e-122
2acvA/T0333-2acvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2acvA/T0333-2acvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5292e-195.86e-117
1f0kA/T0333-1f0kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1f0kA/T0333-1f0kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.3516e-179.47e-105 1f0kA c.87.1.2
1vgvA/T0333-1vgvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vgvA/T0333-1vgvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.0435e-084.13e-58 c.87.1.3
2acwA/T0333-2acwA-t2k-global-adpstyle1.a2m 2acwA/T0333-2acwA-t2k-global-adpstyle1.al 1.2894e-062.59e-44
1rzuA/T0333-1rzuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1rzuA/T0333-1rzuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.0033e-051.81e-48 c.87.1.8
1pswA/T0333-1pswA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pswA/T0333-1pswA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.0714e-055.23e-56 c.87.1.7
1f48A/T0333-1f48A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1f48A/T0333-1f48A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6344e-037.90e-28 1f48A c.37.1.10
c.37.1.10
1cs0C/T0333-1cs0C-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1cs0C/T0333-1cs0C-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6368e-036.14e-45 a.92.1.1
c.24.1.1
c.30.1.1
c.30.1.1
d.142.1.2
d.142.1.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001