# List of top-scoring protein chains for T0332.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gz0A 253 2.73e-21 c.116.1.1,d.79.3.3 76391,76392 1v2xA 194 3.44e-20 c.116.1.1 100274 1zjrA 211 5.57e-19 1x7oA 287 6.76e-19 1mxiA 160 2.50e-17 c.116.1.1 79646 1ipaA 274 7.43e-17 c.116.1.1,d.79.3.3 71254,71255 1d8cA 723 2.13e-01 1d8cA c.1.13.1 29325 1p7tA 731 2.14e-01 c.1.13.1 94319 1z85A 234 3.02e+00 1cdoA 374 3.29e+00 2ohxA b.35.1.2,c.2.1.1 24747,29763 2aqjA 538 3.91e+00 1yobA 179 5.49e+00 1xm7A 195 5.95e+00 1mc5A 374 6.87e+00 b.35.1.2,c.2.1.1 84929,84930 1f8fA 371 7.08e+00 b.35.1.2,c.2.1.1 83246,83247 1m6hA 373 7.22e+00 b.35.1.2,c.2.1.1 74529,74530 1puc 105 7.75e+00 1puc d.97.1.1 40675 1sceA 112 7.88e+00 1puc d.97.1.1 40676 1h67A 108 9.72e+00 a.40.1.1 65643 1aihA 170 9.89e+00 1aihA d.163.1.1 42149 1xq1A 266 1.06e+01 2f4lA 297 1.07e+01 1aqjA 421 1.13e+01 2admA c.66.1.27 34242 2admA 421 1.14e+01 2admA c.66.1.27 34238 1cjxA 357 1.22e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1bct 69 1.26e+01 1bct j.35.1.1 46237 1v5pA 126 1.29e+01 b.55.1.1 108382 1h4vB 421 1.29e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1g38A 393 1.31e+01 2admA c.66.1.27 60235 1szqA 483 1.39e+01 e.44.1.1 99045 1c8sA 196 1.40e+01 1c3wA f.13.1.1 43410 1iiuA 174 1.42e+01 b.60.1.1 66151 1k3rA 268 1.42e+01 b.40.4.10,c.116.1.2 72018,72019 1yl3F 246 1.45e+01 1vqoC 246 1.45e+01 2bujA 317 1.47e+01 1zn8A 180 1.55e+01 1vhkA 268 1.61e+01 b.122.1.2,c.116.1.5 100680,100681 1p0fA 373 1.65e+01 b.35.1.2,c.2.1.1 87642,87643 1rbp 182 1.68e+01 1aqb b.60.1.1 27085 1jydA 183 1.69e+01 b.60.1.1 84255 2glzA 153 1.70e+01 2a1dD 329 1.89e+01 1l0mA 212 1.92e+01 f.13.1.1 73402 2madL 124 1.94e+01 2bbkL g.21.1.1 44887 1qabE 180 1.99e+01 1aqb b.60.1.1 27088 2cd9A 366 2.04e+01 1s53A 227 2.06e+01 f.13.1.1 98521 1s54A 227 2.06e+01 f.13.1.1 98523 1jpc 109 2.07e+01 1b2pA b.78.1.1 27986 1s51A 227 2.07e+01 f.13.1.1 98517 1s52A 227 2.09e+01 f.13.1.1 98519 1e0pA 228 2.10e+01 1c3wA f.13.1.1 43416 1kgbA 231 2.11e+01 f.13.1.1 68581 2cdcA 366 2.13e+01 1r84A 232 2.13e+01 f.13.1.1 97218 1jyjA 183 2.26e+01 b.60.1.1 84256 1jv6A 249 2.27e+01 f.13.1.1 67346 1p8iA 249 2.36e+01 f.13.1.1 87945 1c8rA 249 2.39e+01 1c3wA f.13.1.1 43407 1xm8A 254 2.40e+01 1zdnA 158 2.40e+01 1mgyA 249 2.42e+01 f.13.1.1 84959 1brrA 247 2.46e+01 1c3wA f.13.1.1 43421 1cwqA 248 2.47e+01 1c3wA f.13.1.1 43412 1q5jA 249 2.48e+01 f.13.1.1 95898 1prxA 224 2.49e+01 1prxA c.47.1.10 33076 1xjiA 247 2.49e+01 1qhjA 248 2.50e+01 1c3wA f.13.1.1 43409 1pxsA 249 2.50e+01 f.13.1.1 95299 1pxrA 249 2.50e+01 f.13.1.1 95297 1tn5A 249 2.50e+01 1p8uA 249 2.51e+01 f.13.1.1 87983 1p8hA 249 2.51e+01 f.13.1.1 87944 1fezA 256 2.53e+01 1fezA c.108.1.3 43343 1tn0A 249 2.54e+01 1t0bA 252 2.55e+01 c.23.16.6 106199 1f50A 227 2.57e+01 1c3wA f.13.1.1 43406 1m0kA 262 2.57e+01 f.13.1.1 78344 1rqlA 267 2.59e+01 c.108.1.3 97750 1rdfA 267 2.62e+01 c.108.1.3 104884 1nu9C 281 2.66e+01 a.8.6.1,a.8.6.1 92200,92201 1swvA 267 2.68e+01 1nu7D 282 2.69e+01 a.8.6.1,a.8.6.1 92191,92192 1fbkA 248 2.74e+01 1c3wA f.13.1.1 43426 1yzkA 184 2.74e+01 1ve5A 311 2.91e+01 1w85B 324 2.93e+01 2ar0A 541 3.00e+01 1y2tA 142 3.03e+01 1mt0A 241 3.09e+01 c.37.1.12 85096 1xefA 241 3.09e+01 1d1sA 373 3.11e+01 2ohxA b.35.1.2,c.2.1.1 24727,29743 1q9jA 422 3.24e+01 c.43.1.2,c.43.1.2 104590,104591 1d1tA 373 3.24e+01 2ohxA b.35.1.2,c.2.1.1 24719,29735 1n8iA 741 3.30e+01 c.1.13.1 80297 1csyA 112 3.31e+01 1lckA d.93.1.1 40519 1h1yA 228 3.33e+01 c.1.2.2 76506 2b8nA 429 3.38e+01 1c3wA 222 3.42e+01 1c3wA f.13.1.1 43405 1o6dA 163 3.49e+01 c.116.1.3 92567 1jglH 218 3.51e+01 b.1.1.1,b.1.1.2 66679,66680 1fjgD 209 3.53e+01 1c05A d.66.1.2 39553 1civA 385 3.57e+01 1bmdA c.2.1.5,d.162.1.1 30134,42101 1zxoA 291 3.64e+01 1fbaA 361 3.64e+01 1fbaA c.1.10.1 29120 1xmqD 209 3.64e+01 2fcr 173 3.68e+01 1rcf c.23.5.1 31151 1n32D 208 3.69e+01 d.66.1.2 79872 2b5wA 357 3.79e+01 1jztA 246 3.82e+01 c.104.1.1 63319 2b5vA 357 3.85e+01 1h9hE 231 3.86e+01 b.47.1.2 103810 2bbkL 125 4.11e+01 2bbkL g.21.1.1 44882 1tih 53 4.46e+01 4sgbI g.69.1.1 44725 1t04B 219 4.47e+01 1t3fB 220 4.48e+01 1cozA 129 4.59e+01 1cozA c.26.1.2 31598 1fvrA 327 4.70e+01 d.144.1.7 60047 1wlsA 328 4.78e+01 1ryaA 160 4.85e+01 d.113.1.5 105122 1el6A 219 5.03e+01 1el6B d.182.1.1 42606 1m4zA 238 5.07e+01 b.34.12.1 78630 1qnrA 344 5.08e+01 1qnoA c.1.8.3 28834 1emtH 213 5.23e+01 1igtB b.1.1.1,b.1.1.2 20483,21447 2bf2A 102 5.24e+01 1mfaH 120 5.40e+01 2f4eA 180 5.57e+01 1b4jH 220 5.72e+01 1igtB b.1.1.1,b.1.1.2 20309,21301 1um8A 376 5.77e+01 c.37.1.20 99580 2gfvA 427 5.79e+01 1iso 416 5.89e+01 1iso c.77.1.1 35065 1mg2B 131 5.98e+01 g.21.1.1 79060 1wn2A 121 6.00e+01 1ide 416 6.13e+01 1iso c.77.1.1 35082 1pb1A 416 6.13e+01 c.77.1.1 88014 1cw7A 416 6.13e+01 1iso c.77.1.1 35087 1bl5 414 6.14e+01 1iso c.77.1.1 35083 1cw4A 416 6.18e+01 1iso c.77.1.1 35068 1rxwA 336 6.26e+01 a.60.7.1,c.120.1.2 98059,98060 1x94A 191 6.29e+01 c.80.1.3 109522 1zxxA 319 6.39e+01 1vjrA 271 6.51e+01 c.108.1.14 100832 1ohfA 644 6.57e+01 b.121.4.8 93014 1vk9A 151 6.73e+01 c.139.1.1 108640 1uekA 275 6.79e+01 d.14.1.5,d.58.26.5 88483,88484 1u08A 386 6.80e+01 c.67.1.1 107543 1zhiA 225 6.93e+01 1uzgA 392 6.94e+01 1zbxA 219 6.98e+01 1kt6A 183 7.18e+01 b.60.1.1 84466 1u3tA 374 7.22e+01 1ofdA 1520 7.27e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1r18A 227 7.28e+01 c.66.1.7 96800 1hdzA 374 7.32e+01 2ohxA b.35.1.2,c.2.1.1 24725,29741 1vmeA 410 7.32e+01 c.23.5.1,d.157.1.3 108893,108894 1v6fA 151 7.32e+01 d.109.1.2 108395 1zm8A 259 7.38e+01 1kt5A 175 7.39e+01 b.60.1.1 84465 1yf3A 259 7.45e+01 1wl8A 189 7.49e+01 1hbq 183 7.51e+01 1aqb b.60.1.1 27078 1ebmA 317 7.53e+01 1ebmA a.96.1.3,d.129.1.2 18751,41300 1n3cA 317 7.54e+01 a.96.1.3,d.129.1.2 85293,85294 1n3aA 317 7.54e+01 a.96.1.3,d.129.1.2 85291,85292 1fn7A 317 7.55e+01 1ebmA a.96.1.3,d.129.1.2 59892,59893 1m3qA 317 7.55e+01 a.96.1.3,d.129.1.2 91184,91185 1lwyA 324 7.64e+01 a.96.1.3,d.129.1.2 78285,78286 1aqb 183 7.76e+01 1aqb b.60.1.1 27084 1wm1A 317 7.90e+01 c.69.1.7 109405 1ko9A 345 7.92e+01 a.96.1.3,d.129.1.2 68717,68718 1ag9A 175 8.00e+01 1rcf c.23.5.1 31178 1ni2A 296 8.00e+01 a.11.2.1,b.55.1.5,d.15.1.4 80525,80526,80527 1mlbB 218 8.07e+01 1igtB b.1.1.1,b.1.1.2 20051,21093 1yqrA 319 8.36e+01 1yqkA 319 8.40e+01 1tz1A 80 8.53e+01 1gc7A 297 8.56e+01 1ef1A a.11.2.1,b.55.1.5,d.15.1.4 16370,27005,37613 1yfjA 259 8.58e+01 1pw5A 253 8.65e+01 c.108.1.14 95199 2bf5A 98 8.72e+01 1hdyA 374 8.84e+01 2ohxA b.35.1.2,c.2.1.1 24723,29739 2d2qA 310 8.96e+01