# List of top-scoring protein chains for T0332.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gz0A 253 7.73e-21 c.116.1.1,d.79.3.3 76391,76392 1v2xA 194 3.20e-20 c.116.1.1 100274 1x7oA 287 6.06e-19 1zjrA 211 3.25e-18 1mxiA 160 7.96e-18 c.116.1.1 79646 1ipaA 274 3.78e-17 c.116.1.1,d.79.3.3 71254,71255 1d8cA 723 7.28e-01 1d8cA c.1.13.1 29325 1p7tA 731 7.29e-01 c.1.13.1 94319 1z85A 234 8.27e-01 1k3rA 268 1.21e+00 b.40.4.10,c.116.1.2 72018,72019 2f4lA 297 1.39e+00 1vhkA 268 1.80e+00 b.122.1.2,c.116.1.5 100680,100681 1zxoA 291 3.02e+00 1f8fA 371 3.35e+00 b.35.1.2,c.2.1.1 83246,83247 1ryaA 160 4.20e+00 d.113.1.5 105122 1yzkA 184 4.41e+00 1cdoA 374 4.44e+00 2ohxA b.35.1.2,c.2.1.1 24747,29763 2madL 124 5.12e+00 2bbkL g.21.1.1 44887 1h1yA 228 6.51e+00 c.1.2.2 76506 2bbkL 125 9.65e+00 2bbkL g.21.1.1 44882 1xm8A 254 1.05e+01 1dy2A 180 1.07e+01 1koe d.169.1.5 42451 1csyA 112 1.10e+01 1lckA d.93.1.1 40519 1puc 105 1.11e+01 1puc d.97.1.1 40675 1bct 69 1.11e+01 1bct j.35.1.1 46237 1v5pA 126 1.13e+01 b.55.1.1 108382 1sceA 112 1.15e+01 1puc d.97.1.1 40676 1o6dA 163 1.15e+01 c.116.1.3 92567 1rbp 182 1.21e+01 1aqb b.60.1.1 27085 1jydA 183 1.21e+01 b.60.1.1 84255 1jyjA 183 1.22e+01 b.60.1.1 84256 1mg2B 131 1.26e+01 g.21.1.1 79060 2b8nA 429 1.28e+01 1zxxA 319 1.31e+01 1c8sA 196 1.34e+01 1c3wA f.13.1.1 43410 1fshA 105 1.43e+01 1fshA a.4.5.31 60006 1qabE 180 1.46e+01 1aqb b.60.1.1 27088 1u83A 276 1.56e+01 c.1.27.1 107732 1h67A 108 1.61e+01 a.40.1.1 65643 2cdcA 366 1.64e+01 2cd9A 366 1.68e+01 1i94Q 104 1.68e+01 1fjfQ b.40.4.5 62008 1cjxA 357 1.72e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1hbq 183 1.78e+01 1aqb b.60.1.1 27078 1s54A 227 1.80e+01 f.13.1.1 98523 1s51A 227 1.82e+01 f.13.1.1 98517 1s53A 227 1.82e+01 f.13.1.1 98521 1e0pA 228 1.83e+01 1c3wA f.13.1.1 43416 1s52A 227 1.83e+01 f.13.1.1 98519 1p8iA 249 1.83e+01 f.13.1.1 87945 1kgbA 231 1.85e+01 f.13.1.1 68581 1r84A 232 1.85e+01 f.13.1.1 97218 1jv6A 249 1.88e+01 f.13.1.1 67346 1mc5A 374 1.90e+01 b.35.1.2,c.2.1.1 84929,84930 1l0mA 212 1.91e+01 f.13.1.1 73402 1oixA 191 1.98e+01 1iiuA 174 1.99e+01 b.60.1.1 66151 1m6hA 373 1.99e+01 b.35.1.2,c.2.1.1 74529,74530 1fbkA 248 2.01e+01 1c3wA f.13.1.1 43426 1q5jA 249 2.05e+01 f.13.1.1 95898 1ve5A 311 2.07e+01 1c8rA 249 2.10e+01 1c3wA f.13.1.1 43407 1brrA 247 2.10e+01 1c3wA f.13.1.1 43421 1cwqA 248 2.10e+01 1c3wA f.13.1.1 43412 1pxrA 249 2.11e+01 f.13.1.1 95297 1tn5A 249 2.11e+01 1p8uA 249 2.12e+01 f.13.1.1 87983 1xjiA 247 2.12e+01 1pxsA 249 2.12e+01 f.13.1.1 95299 1qhjA 248 2.13e+01 1c3wA f.13.1.1 43409 1p8hA 249 2.13e+01 f.13.1.1 87944 1xm7A 195 2.17e+01 1mgyA 249 2.18e+01 f.13.1.1 84959 1oivA 191 2.19e+01 c.37.1.8 93076 1tn0A 249 2.20e+01 1m0kA 262 2.23e+01 f.13.1.1 78344 1f50A 227 2.26e+01 1c3wA f.13.1.1 43406 1prxA 224 2.33e+01 1prxA c.47.1.10 33076 2aqjA 538 2.69e+01 1nu9C 281 2.78e+01 a.8.6.1,a.8.6.1 92200,92201 2eshA 118 2.80e+01 1nu7D 282 2.87e+01 a.8.6.1,a.8.6.1 92191,92192 1c3wA 222 2.90e+01 1c3wA f.13.1.1 43405 1q9jA 422 3.10e+01 c.43.1.2,c.43.1.2 104590,104591 2a1dD 329 3.23e+01 1to0A 167 3.30e+01 c.116.1.3 107153 1kj2A 111 3.34e+01 b.1.1.1 72559 1u08A 386 3.37e+01 c.67.1.1 107543 1kb5A 115 3.45e+01 1tvdA b.1.1.1 20611 1vbuA 328 3.53e+01 1jztA 246 3.60e+01 c.104.1.1 63319 1z0iA 170 3.67e+01 1yztA 184 3.70e+01 1kt6A 183 3.71e+01 b.60.1.1 84466 1aihA 170 3.73e+01 1aihA d.163.1.1 42149 1z08A 170 3.76e+01 1kt5A 175 3.78e+01 b.60.1.1 84465 1el6A 219 3.94e+01 1el6B d.182.1.1 42606 1nsf 273 4.01e+01 1d2nA c.37.1.20 32429 1aqb 183 4.05e+01 1aqb b.60.1.1 27084 1j2rA 199 4.05e+01 c.33.1.3 90788 1d2nA 272 4.08e+01 1d2nA c.37.1.20 32428 1zsyA 357 4.22e+01 2ar0A 541 4.23e+01 1vqoC 246 4.43e+01 1yl3F 246 4.43e+01 1qfcA 306 4.54e+01 1uteA d.159.1.1 42077 1qhwA 327 4.61e+01 1uteA d.159.1.1 42076 2aeuA 374 4.89e+01 2bq8X 304 5.11e+01 1warA 310 5.12e+01 2b5vA 357 5.12e+01 1tc5A 194 5.15e+01 c.110.1.1 106752 1ykiA 217 5.17e+01 1fbaA 361 5.19e+01 1fbaA c.1.10.1 29120 1ofdA 1520 5.20e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1cozA 129 5.24e+01 1cozA c.26.1.2 31598 2b5wA 357 5.26e+01 1zdnA 158 5.35e+01 1jglH 218 5.38e+01 b.1.1.1,b.1.1.2 66679,66680 2fkpA 375 5.39e+01 1rm8A 169 5.47e+01 d.92.1.11 97660 1n8iA 741 5.47e+01 c.1.13.1 80297 1wfzA 130 5.48e+01 2ggjA 375 5.64e+01 1r0mA 375 5.72e+01 c.1.11.2,d.54.1.1 104747,104748 1cm0A 168 5.75e+01 1yghA d.108.1.1 40800 1fjgQ 105 5.79e+01 1fjfQ b.40.4.5 25352 1n32Q 104 5.79e+01 b.40.4.5 79886 1h2hA 241 5.86e+01 d.81.1.3,c.2.1.3 70861,83058 1r18A 227 5.93e+01 c.66.1.7 96800 1h4vB 421 5.93e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1vj2A 126 6.03e+01 b.82.1.10 100796 1jpc 109 6.05e+01 1b2pA b.78.1.1 27986 1vh0A 161 6.05e+01 c.116.1.3 100626 1qe5A 266 6.10e+01 1b8oA c.56.2.1 33784 1qnrA 344 6.11e+01 1qnoA c.1.8.3 28834 1nox 205 6.11e+01 1nox d.90.1.1 40242 2cwlA 302 6.13e+01 1wz7A 111 6.21e+01 1y7iA 268 6.26e+01 2bujA 317 6.33e+01 2ggiA 375 6.40e+01 1w9gA 104 6.40e+01 1sheA 103 6.44e+01 d.274.1.1 105551 1xklA 273 6.49e+01 2gfvA 427 6.53e+01 1civA 385 6.55e+01 1bmdA c.2.1.5,d.162.1.1 30134,42101 1avaC 181 6.58e+01 1avaC b.42.4.1 25604 1hx8A 299 6.67e+01 1hg5A a.7.8.2,a.118.9.3 90362,90363 1id3B 102 6.70e+01 a.22.1.1 66113 1j5pA 253 6.71e+01 d.81.1.3,c.2.1.3 71577,83092 1y2tA 142 6.90e+01 2f9lA 199 6.95e+01 2f4eA 180 7.01e+01 1vhyA 257 7.04e+01 b.122.1.2,c.116.1.5 100714,100715 1nxzA 246 7.05e+01 b.122.1.2,c.116.1.5 86391,86392 1eyxA 164 7.06e+01 1cpcA a.1.1.3 15669 1x94A 191 7.15e+01 c.80.1.3 109522 1j49A 333 7.16e+01 c.2.1.4,c.23.12.1 71498,71499 2def 147 7.18e+01 1bs4A d.167.1.1 42305 1def 147 7.20e+01 1bs4A d.167.1.1 42306 1xwdC 252 7.20e+01 1rifA 282 7.25e+01 c.37.1.23 97507 2bf2A 102 7.27e+01 1n0xL 215 7.37e+01 b.1.1.1,b.1.1.2 91532,91533 1qpwA 141 7.46e+01 1abwA a.1.1.2 15390 1rjwA 339 7.51e+01 b.35.1.2,c.2.1.1 97582,97583 1j4aA 333 7.68e+01 c.2.1.4,c.23.12.1 71502,71503 1fg7A 356 7.72e+01 1gewA c.67.1.1 59819 1dff 164 7.83e+01 1bs4A d.167.1.1 42304 1uweL 213 7.84e+01 b.1.1.1,b.1.1.2 100105,100106 1yacA 208 7.96e+01 1yacA c.33.1.3 31757 1k4mA 213 7.99e+01 c.26.1.3 77258 1mzjA 339 8.06e+01 c.95.1.2,c.95.1.2 79700,79701 1xeoA 168 8.09e+01 1dd5A 185 8.13e+01 1dd5A d.67.3.1 39564 2a7sA 548 8.14e+01 1q5iA 249 8.23e+01 f.13.1.1 95896 1xtoA 311 8.31e+01 1hx6A 394 8.35e+01 1cjdA b.121.2.1,b.121.2.1 58995,58996 1w8xA 395 8.35e+01 1h5yA 253 8.46e+01 c.1.2.1 65638 1p0fA 373 8.47e+01 b.35.1.2,c.2.1.1 87642,87643 8jdwA 386 8.51e+01 1jdw d.126.1.2 41132 1jdw 423 8.58e+01 1jdw d.126.1.2 41129 1tq8A 163 8.63e+01 c.26.2.4 107204 4jdwA 423 8.80e+01 1jdw d.126.1.2 41137 1ag9A 175 8.82e+01 1rcf c.23.5.1 31178 1zm8A 259 8.86e+01 1xnwA 530 8.89e+01 1xdwA 331 8.94e+01 1fcdA 401 8.99e+01 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218