# List of top-scoring protein chains for T0332.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gz0A 253 2.92e-20 c.116.1.1,d.79.3.3 76391,76392 1v2xA 194 2.20e-19 c.116.1.1 100274 1x7oA 287 2.84e-18 1zjrA 211 8.88e-18 1mxiA 160 2.21e-17 c.116.1.1 79646 1ipaA 274 8.12e-17 c.116.1.1,d.79.3.3 71254,71255 1z85A 234 8.23e-01 1d8cA 723 8.99e-01 1d8cA c.1.13.1 29325 1p7tA 731 9.01e-01 c.1.13.1 94319 1vhkA 268 1.46e+00 b.122.1.2,c.116.1.5 100680,100681 1ryaA 160 1.87e+00 d.113.1.5 105122 2f4lA 297 2.60e+00 1h1yA 228 4.05e+00 c.1.2.2 76506 1yzkA 184 4.62e+00 1k3rA 268 5.23e+00 b.40.4.10,c.116.1.2 72018,72019 1cdoA 374 5.44e+00 2ohxA b.35.1.2,c.2.1.1 24747,29763 1o6dA 163 6.76e+00 c.116.1.3 92567 1f8fA 371 7.41e+00 b.35.1.2,c.2.1.1 83246,83247 1rbp 182 8.85e+00 1aqb b.60.1.1 27085 1jydA 183 8.88e+00 b.60.1.1 84255 1jyjA 183 8.93e+00 b.60.1.1 84256 1iiuA 174 9.54e+00 b.60.1.1 66151 2madL 124 9.90e+00 2bbkL g.21.1.1 44887 1qabE 180 1.06e+01 1aqb b.60.1.1 27088 1zxoA 291 1.07e+01 1v5pA 126 1.32e+01 b.55.1.1 108382 1oixA 191 1.42e+01 1aqb 183 1.42e+01 1aqb b.60.1.1 27084 1oivA 191 1.47e+01 c.37.1.8 93076 1hbq 183 1.50e+01 1aqb b.60.1.1 27078 1kt6A 183 1.53e+01 b.60.1.1 84466 1kt5A 175 1.55e+01 b.60.1.1 84465 1h67A 108 1.58e+01 a.40.1.1 65643 2bbkL 125 1.61e+01 2bbkL g.21.1.1 44882 2aqjA 538 1.62e+01 1xm8A 254 1.69e+01 1i94Q 104 1.75e+01 1fjfQ b.40.4.5 62008 2b8nA 429 1.79e+01 1prxA 224 1.83e+01 1prxA c.47.1.10 33076 1to0A 167 1.93e+01 c.116.1.3 107153 1bct 69 1.93e+01 1bct j.35.1.1 46237 1fshA 105 1.96e+01 1fshA a.4.5.31 60006 1csyA 112 1.96e+01 1lckA d.93.1.1 40519 1puc 105 1.96e+01 1puc d.97.1.1 40675 1mg2B 131 1.99e+01 g.21.1.1 79060 2ar0A 541 2.02e+01 1sceA 112 2.02e+01 1puc d.97.1.1 40676 1c8sA 196 2.23e+01 1c3wA f.13.1.1 43410 1dy2A 180 2.39e+01 1koe d.169.1.5 42451 1civA 385 2.50e+01 1bmdA c.2.1.5,d.162.1.1 30134,42101 1jztA 246 2.63e+01 c.104.1.1 63319 1mc5A 374 2.66e+01 b.35.1.2,c.2.1.1 84929,84930 1m6hA 373 2.85e+01 b.35.1.2,c.2.1.1 74529,74530 2cdcA 366 3.07e+01 1kj2A 111 3.19e+01 b.1.1.1 72559 1s54A 227 3.25e+01 f.13.1.1 98523 1aihA 170 3.25e+01 1aihA d.163.1.1 42149 1e0pA 228 3.26e+01 1c3wA f.13.1.1 43416 1s51A 227 3.26e+01 f.13.1.1 98517 2cd9A 366 3.28e+01 1s53A 227 3.28e+01 f.13.1.1 98521 1s52A 227 3.30e+01 f.13.1.1 98519 1kgbA 231 3.30e+01 f.13.1.1 68581 1cozA 129 3.31e+01 1cozA c.26.1.2 31598 1r84A 232 3.31e+01 f.13.1.1 97218 1kb5A 115 3.32e+01 1tvdA b.1.1.1 20611 1p8iA 249 3.39e+01 f.13.1.1 87945 1l0mA 212 3.45e+01 f.13.1.1 73402 1jv6A 249 3.50e+01 f.13.1.1 67346 8jdwA 386 3.59e+01 1jdw d.126.1.2 41132 1cjxA 357 3.59e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1vbuA 328 3.59e+01 4jdwA 423 3.60e+01 1jdw d.126.1.2 41137 1jdw 423 3.62e+01 1jdw d.126.1.2 41129 1q5jA 249 3.66e+01 f.13.1.1 95898 2b5vA 357 3.67e+01 2b5wA 357 3.68e+01 1h2hA 241 3.77e+01 d.81.1.3,c.2.1.3 70861,83058 1wz7A 111 3.82e+01 1fbkA 248 3.88e+01 1c3wA f.13.1.1 43426 1zxxA 319 3.88e+01 1pxrA 249 3.90e+01 f.13.1.1 95297 1brrA 247 3.90e+01 1c3wA f.13.1.1 43421 1tn5A 249 3.91e+01 1cwqA 248 3.91e+01 1c3wA f.13.1.1 43412 1p8uA 249 3.92e+01 f.13.1.1 87983 1xjiA 247 3.93e+01 1qhjA 248 3.94e+01 1c3wA f.13.1.1 43409 2jdxA 385 3.94e+01 1jdw d.126.1.2 41139 1pxsA 249 3.95e+01 f.13.1.1 95299 1p8hA 249 3.95e+01 f.13.1.1 87944 1rlbE 174 3.97e+01 1aqb b.60.1.1 27090 1c8rA 249 3.99e+01 1c3wA f.13.1.1 43407 1tn0A 249 4.03e+01 1f50A 227 4.04e+01 1c3wA f.13.1.1 43406 1mgyA 249 4.08e+01 f.13.1.1 84959 1z0iA 170 4.09e+01 1m0kA 262 4.09e+01 f.13.1.1 78344 1yztA 184 4.10e+01 2fkpA 375 4.16e+01 1w9gA 104 4.18e+01 1j5pA 253 4.22e+01 d.81.1.3,c.2.1.3 71577,83092 1zdnA 158 4.25e+01 2a1dD 329 4.25e+01 1q1rA 431 4.26e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1nu9C 281 4.35e+01 a.8.6.1,a.8.6.1 92200,92201 1el6A 219 4.39e+01 1el6B d.182.1.1 42606 1nu7D 282 4.39e+01 a.8.6.1,a.8.6.1 92191,92192 1z08A 170 4.41e+01 1q9jA 422 4.50e+01 c.43.1.2,c.43.1.2 104590,104591 2ggjA 375 4.52e+01 1u83A 276 4.52e+01 c.1.27.1 107732 1r0mA 375 4.58e+01 c.1.11.2,d.54.1.1 104747,104748 1tc5A 194 4.70e+01 c.110.1.1 106752 1fbaA 361 4.78e+01 1fbaA c.1.10.1 29120 2ggiA 375 4.87e+01 1nsf 273 4.88e+01 1d2nA c.37.1.20 32429 1dqpA 230 4.95e+01 1dqnA c.61.1.1 34069 1d2nA 272 4.95e+01 1d2nA c.37.1.20 32428 1k4mA 213 5.11e+01 c.26.1.3 77258 1qfcA 306 5.28e+01 1uteA d.159.1.1 42077 1vh0A 161 5.29e+01 c.116.1.3 100626 1qhwA 327 5.37e+01 1uteA d.159.1.1 42076 1ni2A 296 5.51e+01 a.11.2.1,b.55.1.5,d.15.1.4 80525,80526,80527 1qe5A 266 5.56e+01 1b8oA c.56.2.1 33784 1r18A 227 5.56e+01 c.66.1.7 96800 1c3wA 222 5.65e+01 1c3wA f.13.1.1 43405 1nox 205 5.69e+01 1nox d.90.1.1 40242 1ykiA 217 5.91e+01 1h4vB 421 5.94e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1in7A 334 6.03e+01 1hqcA a.4.5.11,c.37.1.20 62603,62604 1iooA 196 6.10e+01 d.124.1.1 71250 1rm8A 169 6.11e+01 d.92.1.11 97660 2eshA 118 6.11e+01 1fezA 256 6.24e+01 1fezA c.108.1.3 43343 1fjgQ 105 6.31e+01 1fjfQ b.40.4.5 25352 1n32Q 104 6.33e+01 b.40.4.5 79886 1rqlA 267 6.46e+01 c.108.1.3 97750 2bleA 367 6.51e+01 1rdfA 267 6.53e+01 c.108.1.3 104884 1ve5A 311 6.61e+01 1zm8A 259 6.62e+01 1nhyA 219 6.68e+01 a.45.1.1,c.47.1.5 80520,80521 1omoA 322 6.70e+01 c.2.1.13 104017 1swvA 267 6.76e+01 1vllA 334 6.77e+01 c.2.1.13 108834 2f9lA 199 6.77e+01 1xnwA 530 6.77e+01 1y7iA 268 6.86e+01 1j2rA 199 7.03e+01 c.33.1.3 90788 1xklA 273 7.14e+01 1yacA 208 7.33e+01 1yacA c.33.1.3 31757 1ofdA 1520 7.35e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1kamA 194 7.38e+01 c.26.1.3 72254 1h5yA 253 7.40e+01 c.1.2.1 65638 1gc7A 297 7.53e+01 1ef1A a.11.2.1,b.55.1.5,d.15.1.4 16370,27005,37613 1wfzA 130 7.61e+01 2bq8X 304 7.63e+01 1warA 310 7.66e+01 2d2qA 310 7.88e+01 2cwlA 302 7.90e+01 1xm7A 195 8.03e+01 1s4dA 280 8.08e+01 1p0fA 373 8.10e+01 b.35.1.2,c.2.1.1 87642,87643 1j19A 317 8.11e+01 a.11.2.1,b.55.1.5,d.15.1.4 83958,83959,83960 2bujA 317 8.22e+01 1uweL 213 8.22e+01 b.1.1.1,b.1.1.2 100105,100106 1xb6A 128 8.25e+01 1jpc 109 8.31e+01 1b2pA b.78.1.1 27986 1bcfA 158 8.41e+01 1bcfA a.25.1.1 16648 2gfvA 427 8.55e+01 1qnrA 344 8.74e+01 1qnoA c.1.8.3 28834 1se8A 301 8.77e+01 b.40.4.3 105448 1oeyJ 107 8.82e+01 d.15.2.2 92804 1x94A 191 8.86e+01 c.80.1.3 109522