# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fhqA 141 6.90e-10 1dnlA 199 2.41e-09 1ci0A b.45.1.1 25753 1rfeA 162 2.79e-09 1g79A 218 3.34e-09 1ci0A b.45.1.1 25752 1ty9A 222 3.16e-08 1nrgA 261 5.71e-08 b.45.1.1 80694 1vl7A 157 1.29e-07 b.45.1.1 108732 2fg9A 178 4.30e-06 2aq6A 147 8.86e-06 2asfA 137 9.82e-06 2furA 209 1.83e-05 1xhnA 184 5.05e-05 1w9aA 147 1.04e-04 2arzA 247 1.56e-04 1flmA 122 1.95e-02 1axj b.45.1.1 25747 1ejeA 192 4.53e-01 1ejeA b.45.1.2 25757 1v54B 227 3.65e+00 b.6.1.2,f.17.2.1 100322,100323 1w1hA 151 3.77e+00 1v0wA 506 6.00e+00 d.136.1.2,d.136.1.2 108220,108221 1r6xA 395 6.67e+00 b.122.1.3,c.26.1.5 97167,97168 2fauA 341 7.03e+00 1s5jA 847 7.52e+00 1zkjA 359 7.95e+00 1bfg 146 8.56e+00 1bfg b.42.1.1 25485 1aly 146 9.01e+00 1aly b.22.1.1 23856 1l3iA 192 9.08e+00 c.66.1.22 77676 1rgzA 363 9.22e+00 e.3.1.1 97457 1yqyA 523 1.02e+01 1bouB 302 1.05e+01 1bouB c.56.6.1 33859 1vpkA 378 1.10e+01 1sx5A 244 1.14e+01 c.52.1.2 99023 1yzsA 121 1.14e+01 2erfA 209 1.18e+01 1pmi 440 1.20e+01 1pmi b.82.1.3 28114 1pvmA 184 1.22e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2chnA 716 1.22e+01 1c8uA 285 1.27e+01 1c8uA d.38.1.3,d.38.1.3 38547,38548 1e4iA 447 1.27e+01 1e70M c.1.8.4 59225 1z2wA 192 1.32e+01 2eu9A 355 1.43e+01 1vlyA 338 1.45e+01 b.44.2.1,d.250.1.1 108871,108872 1oacA 727 1.53e+01 1oacA b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1qwdA 177 1.57e+01 b.60.1.1 96471 1j1lA 290 1.57e+01 b.82.1.12 90766 1vc1A 110 1.65e+01 c.13.2.1 108493 1cbs 137 1.65e+01 1hmt b.60.1.2 27201 1xdfA 157 1.66e+01 1d2fA 390 1.75e+01 1d2fA c.67.1.3 34411 1v30A 124 1.75e+01 1z90A 469 1.78e+01 1rloA 271 1.88e+01 1zdzA 302 1.88e+01 1wnyA 186 2.01e+01 1udzA 182 2.01e+01 b.51.1.1 99239 1ockA 412 2.05e+01 c.117.1.1 86802 1c7sA 858 2.12e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1ojrA 274 2.14e+01 c.74.1.1 93147 1xw3A 110 2.24e+01 1ts9A 102 2.35e+01 1z84A 351 2.36e+01 1zybA 232 2.39e+01 2d37A 176 2.40e+01 1twfK 120 2.44e+01 1mkmA 249 2.47e+01 a.4.5.33,d.110.2.2 79242,79243 1ye8A 178 2.48e+01 2a1fA 247 2.48e+01 1rgyA 360 2.52e+01 e.3.1.1 97456 1yc5A 246 2.58e+01 2f6kA 307 2.59e+01 1t77A 414 2.63e+01 1pzxA 289 2.63e+01 c.119.1.1 95484 1rlmA 271 2.65e+01 2b3gA 123 2.76e+01 1inlA 296 2.77e+01 c.66.1.17 66220 2bjfA 329 2.84e+01 1jyhA 157 2.92e+01 d.60.1.3 71956 1z0sA 278 2.95e+01 2f15A 96 3.03e+01 1wmxA 205 3.04e+01 b.18.1.24 109418 1w6sA 599 3.05e+01 2cfxA 144 3.10e+01 1q7fA 286 3.15e+01 b.68.9.1 96036 1suwA 249 3.17e+01 e.52.1.1 106027 2ffyA 358 3.20e+01 1qtnA 164 3.30e+01 1pauA c.17.1.1 30999 2agyA 361 3.36e+01 2b5eA 504 3.75e+01 1zd7A 159 3.80e+01 1w3oA 216 3.91e+01 2fpeA 62 4.15e+01 2bwrA 401 4.17e+01 1i0rA 169 4.36e+01 1i0rA b.45.1.2 61489 1kgdA 180 4.43e+01 c.37.1.1 68582 1nmeA 146 4.52e+01 c.17.1.1 85874 1rl6A 177 4.62e+01 1rl6A d.141.1.1,d.141.1.1 41473,41474 1ufyA 122 4.63e+01 d.79.1.2 88489 1iooA 196 4.63e+01 d.124.1.1 71250 1ee8A 266 4.78e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 2bvfA 459 4.90e+01 1wj9A 211 4.97e+01 1jwqA 179 5.01e+01 c.56.5.6 90921 2ghsA 326 5.10e+01 1wmaA 276 5.15e+01 3fib 249 5.21e+01 3fib d.171.1.1 42455 1zirA 173 5.24e+01 1n13B 113 5.24e+01 2fcbA 173 5.35e+01 2fcbA b.1.1.4,b.1.1.4 21781,21782 2ahuA 531 5.35e+01 1tfr 305 5.37e+01 1tfr a.60.7.1,c.120.1.2 18081,33351 1kb0A 677 5.38e+01 a.3.1.6,b.70.1.1 68378,68379 1si6X 282 5.40e+01 1x0pA 143 5.53e+01 2bbsA 290 5.53e+01 1dljA 402 5.60e+01 1dliA a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1m8uA 173 5.68e+01 b.11.1.1,b.11.1.1 91233,91234 1tr8A 102 5.71e+01 1vkbA 161 5.83e+01 d.269.1.1 108643 1pjxA 314 5.83e+01 b.68.6.1 104167 2bgiA 272 5.89e+01 1gky 187 5.94e+01 1gky c.37.1.1 31839 1ex7A 186 5.95e+01 1gky c.37.1.1 59537 1z5bA 469 6.02e+01 1ytqA 204 6.12e+01 1z57A 339 6.16e+01 1w9hA 427 6.25e+01 2fp4B 395 6.27e+01 2bv2A 83 6.40e+01 2au3A 407 6.49e+01 1gz8A 299 6.52e+01 d.144.1.7 83405 2gokA 429 6.55e+01 1npsA 88 6.58e+01 1prs b.11.1.1 23622 1ttwA 138 6.66e+01 d.198.1.1 107308 1z7gA 217 6.66e+01 2ae5B 528 6.68e+01 1vgyA 393 6.69e+01 c.56.5.4,d.58.19.1 100620,100621 1e19A 314 6.71e+01 1b7bA c.73.1.1 34967 2eifA 136 6.78e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 2f4pA 147 6.84e+01 1q3iA 214 6.91e+01 d.220.1.1 104524 1ywxA 102 6.99e+01 1rypF 233 7.01e+01 1rypF d.153.1.4 41937 1bcpB 199 7.14e+01 1bcpB b.40.2.1,d.169.1.2 25120,42429 1w8oA 601 7.17e+01 1mkfA 382 7.23e+01 b.116.1.1 79232 1w0dA 337 7.28e+01 1hgxA 183 7.36e+01 1tc1A c.61.1.1 34027 1et9A 204 7.50e+01 1an8 b.40.2.2,d.15.6.1 25204,37793 1b7yA 350 7.59e+01 1pysA d.104.1.1 40776 1sl4A 155 7.64e+01 d.169.1.1 105710 1r6lA 239 7.72e+01 d.14.1.4,d.101.1.1 97153,97154 1v02A 565 7.74e+01 c.1.8.4 108194 1ywqA 200 7.79e+01 2fj8A 125 7.81e+01 1v0eA 666 7.88e+01 1c7nA 399 7.94e+01 1d2fA c.67.1.3 34413 3psg 370 7.99e+01 1smrA b.50.1.2 26841 1ktbA 405 8.15e+01 b.71.1.1,c.1.8.1 72960,72961 1z4eA 153 8.15e+01 2gefA 217 8.19e+01 1gxuA 91 8.25e+01 d.58.10.1 76378 1txvA 452 8.27e+01 1u7bA 261 8.27e+01 1i24A 404 8.28e+01 c.2.1.2 83663 1drw 273 8.34e+01 1drw c.2.1.3,d.81.1.3 30057,39972 1mjfA 281 8.38e+01 c.66.1.17 79198 1yr2A 741 8.41e+01 1c7qA 445 8.52e+01 2pgi c.80.1.2 35307 1a92A 50 8.52e+01 1a92A h.4.6.1 45791 1rg8A 146 8.58e+01 1mw9X 592 8.63e+01 e.10.1.1 91480 1zd9A 188 8.63e+01 1uj6A 227 8.72e+01 c.124.1.4,d.58.40.1 107898,107899 1gefA 123 8.73e+01 1gefA c.52.1.18 60465 1ju2A 536 8.81e+01 c.3.1.2,d.16.1.1 77169,77170 1di6A 195 8.81e+01 1di6A c.57.1.1 33863 1c1lA 136 8.87e+01 1c1lA b.29.1.3 24219 1pg6A 243 8.92e+01 b.82.5.2 94673 2gfsA 372 8.94e+01