# List of top-scoring protein chains for t06-100-30-str2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fhqA 141 2.01e-09 1rfeA 162 1.06e-08 1dnlA 199 2.93e-08 1ci0A b.45.1.1 25753 1g79A 218 3.51e-08 1ci0A b.45.1.1 25752 1ty9A 222 1.16e-07 1vl7A 157 1.55e-07 b.45.1.1 108732 1nrgA 261 1.86e-07 b.45.1.1 80694 2fg9A 178 3.87e-06 2aq6A 147 9.97e-06 2furA 209 1.27e-05 2asfA 137 1.40e-05 2arzA 247 3.94e-05 1xhnA 184 4.08e-05 1w9aA 147 5.37e-05 1flmA 122 4.83e-03 1axj b.45.1.1 25747 1ejeA 192 4.39e-01 1ejeA b.45.1.2 25757 2a1fA 247 5.50e-01 1v0wA 506 7.53e-01 d.136.1.2,d.136.1.2 108220,108221 3sil 379 1.94e+00 3sil b.68.1.1 27542 1ri6A 343 2.04e+00 b.69.11.1 97503 1m8uA 173 2.08e+00 b.11.1.1,b.11.1.1 91233,91234 1guiA 155 3.05e+00 b.18.1.14 76351 2erfA 209 3.23e+00 1vheA 373 3.52e+00 b.49.3.1,c.56.5.4 100669,100670 1ytqA 204 3.67e+00 1l0qA 391 3.89e+00 b.1.3.1,b.69.2.3 77644,77645 1ylnA 252 3.91e+00 1zirA 173 4.13e+00 1okiA 210 4.37e+00 b.11.1.1,b.11.1.1 93255,93256 1z90A 469 4.62e+00 2gclA 261 4.71e+00 1vlyA 338 4.76e+00 b.44.2.1,d.250.1.1 108871,108872 2ghsA 326 4.90e+00 2bv2A 83 5.02e+00 1e4iA 447 5.48e+00 1e70M c.1.8.4 59225 1amm 174 5.77e+00 1amm b.11.1.1,b.11.1.1 23587,23588 1jmxA 494 6.27e+00 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1qwdA 177 6.79e+00 b.60.1.1 96471 1i4uA 181 6.93e+00 b.60.1.1 61732 1w6sA 599 7.12e+00 1yc5A 246 7.19e+00 1z2wA 192 7.20e+00 2bneA 241 7.57e+00 1te0A 318 7.98e+00 1ksiA 642 9.40e+00 1ksiB b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 1i0rA 169 9.84e+00 1i0rA b.45.1.2 61489 1di6A 195 1.06e+01 1di6A c.57.1.1 33863 2fp8A 322 1.07e+01 1yr2A 741 1.08e+01 1w1hA 151 1.09e+01 1u7bA 261 1.10e+01 2fpeA 62 1.15e+01 2cn3A 737 1.15e+01 1r6xA 395 1.16e+01 b.122.1.3,c.26.1.5 97167,97168 2f6kA 307 1.17e+01 1dzkA 157 1.20e+01 1obpA b.60.1.1 27096 1q7fA 286 1.22e+01 b.68.9.1 96036 2dcnA 311 1.23e+01 1vgjA 184 1.23e+01 1zd7A 159 1.24e+01 1wzoA 246 1.29e+01 1w3oA 216 1.30e+01 1rliA 184 1.35e+01 c.23.5.6 97647 1h4aX 173 1.41e+01 b.11.1.1,b.11.1.1 83479,83480 1n3lA 372 1.42e+01 c.26.1.1 79966 1i24A 404 1.45e+01 c.2.1.2 83663 1j98A 157 1.54e+01 1j98A d.185.1.2 62755 2acaA 189 1.55e+01 3fib 249 1.56e+01 3fib d.171.1.1 42455 1yymG 313 1.60e+01 1zybA 232 1.61e+01 2ahuA 531 1.63e+01 1b7yA 350 1.66e+01 1pysA d.104.1.1 40776 1amuA 563 1.66e+01 1amuA e.23.1.1 43351 1r75A 141 1.67e+01 b.134.1.1 97189 1t77A 414 1.69e+01 1pjxA 314 1.78e+01 b.68.6.1 104167 1txvA 452 1.80e+01 1v54B 227 1.83e+01 b.6.1.2,f.17.2.1 100322,100323 1pvmA 184 1.87e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1gt1A 159 1.88e+01 b.60.1.1 90515 1h30A 422 1.89e+01 b.29.1.4,b.29.1.4 76604,76605 1kt6A 183 1.93e+01 b.60.1.1 84466 1suuA 312 1.95e+01 b.68.10.1 99006 1vggA 161 1.97e+01 1aly 146 1.98e+01 1aly b.22.1.1 23856 1kxoA 184 1.99e+01 b.60.1.1 84475 1ed8A 449 2.08e+01 1b8jA c.76.1.1 34988 1bebA 162 2.10e+01 1bebA b.60.1.1 27115 1oacA 727 2.17e+01 1oacA b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1m1zA 513 2.20e+01 c.26.2.1,d.153.1.1 78457,78458 2f91B 35 2.20e+01 2azeA 155 2.21e+01 1vpkA 378 2.21e+01 2agyA 361 2.23e+01 2d37A 176 2.27e+01 1rocA 155 2.28e+01 b.1.22.1 97673 2g6fX 59 2.29e+01 1wj9A 211 2.35e+01 1zkjA 359 2.37e+01 1pfo 500 2.40e+01 1pfo f.9.1.1 43826 1r2zA 274 2.42e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1cbs 137 2.44e+01 1hmt b.60.1.2 27201 1wp5A 323 2.47e+01 1y43B 173 2.49e+01 1sl4A 155 2.52e+01 d.169.1.1 105710 2fauA 341 2.68e+01 1z2nX 324 2.72e+01 1rlw 126 2.75e+01 1rlw b.7.1.1 23177 1yoaA 159 2.91e+01 1pieA 419 2.98e+01 d.14.1.5,d.58.26.7 94706,94707 1e5pA 151 3.07e+01 1bj7 b.60.1.1 59272 1z4eA 153 3.13e+01 1pg6A 243 3.14e+01 b.82.5.2 94673 1ye8A 178 3.22e+01 1npeA 267 3.24e+01 b.68.5.1 92032 1t5rA 284 3.24e+01 f.6.1.1 106465 2f15A 96 3.27e+01 1suwA 249 3.30e+01 e.52.1.1 106027 2cw5A 255 3.39e+01 2bhgA 209 3.46e+01 2d4qA 257 3.51e+01 1ockA 412 3.55e+01 c.117.1.1 86802 1gotB 340 3.61e+01 1tbgA b.69.4.1 27648 2gr8A 99 3.64e+01 1ka1A 357 3.68e+01 e.7.1.1 68369 1hm9A 468 3.68e+01 b.81.1.4,c.68.1.5 65866,65867 1ysjA 404 3.68e+01 1bfg 146 3.69e+01 1bfg b.42.1.1 25485 1lktA 104 3.70e+01 1lktA b.90.1.1 28398 1iz6A 138 3.71e+01 b.34.5.2,b.40.4.5 76976,76977 1y08A 323 3.74e+01 1ud9A 245 3.81e+01 d.131.1.2,d.131.1.2 107768,107769 1zsyA 357 3.84e+01 1ifc 132 3.86e+01 b.60.1.2 27173 1c8uA 285 3.91e+01 1c8uA d.38.1.3,d.38.1.3 38547,38548 1crzA 403 3.92e+01 1crzA b.68.4.1,c.51.2.1 27629,33211 1i39A 225 4.03e+01 1ekeA c.55.3.1 61585 2bbkH 355 4.06e+01 2bbkH b.69.2.1 27634 2b4yA 271 4.07e+01 1xo0A 324 4.08e+01 2sak 121 4.13e+01 2sak d.15.5.1 37711 1o7dE 126 4.15e+01 1cv8 174 4.18e+01 1cv8 d.3.1.1 37089 2fcbA 173 4.19e+01 2fcbA b.1.1.4,b.1.1.4 21781,21782 2a6zA 222 4.23e+01 2dg5B 190 4.26e+01 1q1uA 144 4.27e+01 b.42.1.1 95608 1yfqA 342 4.30e+01 1vgyA 393 4.33e+01 c.56.5.4,d.58.19.1 100620,100621 2awkA 228 4.41e+01 1rgzA 363 4.51e+01 e.3.1.1 97457 1d1gA 168 4.52e+01 1d1gA c.71.1.1 34889 1k32A 1045 4.54e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1s5jA 847 4.58e+01 1k0eA 453 4.62e+01 d.161.1.1 67938 1rttA 193 4.70e+01 c.23.5.4 105098 1xfkA 336 4.79e+01 1sx5A 244 4.80e+01 c.52.1.2 99023 2b8nA 429 4.81e+01 1x72A 334 4.88e+01 d.126.1.6 109495 1tdhA 364 4.90e+01 a.156.1.2,b.113.1.1,g.39.1.8 106772,106773,106774 1qhtA 775 4.93e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1z5bA 469 4.94e+01 2basA 431 4.96e+01 1wb9A 800 4.98e+01 1v30A 124 5.03e+01 1fxkC 133 5.05e+01 1fxkC a.2.5.1 15702 2bjrA 368 5.08e+01 2bfxA 284 5.13e+01 2gcfA 73 5.15e+01 1et9A 204 5.18e+01 1an8 b.40.2.2,d.15.6.1 25204,37793 1bj7 156 5.25e+01 1bj7 b.60.1.1 27113 1jwqA 179 5.27e+01 c.56.5.6 90921 1mkmA 249 5.30e+01 a.4.5.33,d.110.2.2 79242,79243 1bf6A 291 5.31e+01 1pscA c.1.9.3 29065 1w0pA 781 5.31e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1ybdA 239 5.31e+01 1lp9E 194 5.32e+01 b.1.1.1,b.1.1.2 91086,91087 1qynA 153 5.33e+01 d.33.1.1 96597 1twfK 120 5.46e+01 1r4pB 70 5.66e+01 b.40.2.1 97026 1zx5A 300 5.68e+01 1tuhA 156 5.68e+01 d.17.4.11 107345 2gefA 217 5.71e+01 2fdbM 164 5.73e+01 1r0vA 305 5.74e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 1n08A 163 5.75e+01 b.43.5.1 79730 1kvkA 395 5.78e+01 d.14.1.5,d.58.26.3 73060,73061 1mjfA 281 5.84e+01 c.66.1.17 79198 1mw9X 592 5.92e+01 e.10.1.1 91480 1j3mA 129 6.06e+01 d.129.7.1 103836 1gweA 503 6.07e+01 e.5.1.1 70667 2g58A 121 6.09e+01 1xphA 150 6.11e+01 1lbvA 252 6.11e+01 e.7.1.1 73813 1udzA 182 6.11e+01 b.51.1.1 99239 1txlA 215 6.30e+01 b.60.1.4 107429 1gppA 237 6.30e+01 b.86.1.2 76262 1qyaA 307 6.33e+01 d.21.1.2,d.21.1.2 104653,104654 1ts9A 102 6.38e+01 2f6eA 127 6.42e+01 2ar1A 172 6.50e+01 2gjgA 248 6.57e+01 1ojrA 274 6.61e+01 c.74.1.1 93147 1zxtA 76 6.64e+01 1epwA 1290 6.65e+01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1t0iA 191 6.65e+01 c.23.5.4 106209 1ash 150 6.68e+01 1ash a.1.1.2 15622 1dkzA 219 6.69e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1dwkA 156 6.69e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606 1u02A 239 6.77e+01 c.108.1.15 107538 1wnyA 186 6.81e+01 2ghrA 302 6.85e+01 2cmuA 342 6.90e+01 2b3gA 123 6.95e+01 2bjfA 329 6.95e+01 1voqa 90 6.97e+01 1zh5A 195 6.98e+01 1qksA 567 7.01e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 1sdjA 310 7.05e+01 d.21.1.2,d.21.1.2 98807,98808 1pbyB 337 7.16e+01 b.69.2.2 94422 16pk 415 7.19e+01 16pk c.86.1.1 35454 1p80A 753 7.20e+01 c.23.16.3,e.5.1.1 94337,94338 1tyv 542 7.22e+01 1tyv b.80.1.6 28038 1rwrA 301 7.31e+01 b.80.1.11 97990 2flsA 132 7.35e+01 2fdiA 211 7.40e+01 1hdkA 141 7.61e+01 b.29.1.3 65807 1h09A 338 7.62e+01 b.109.1.1,c.1.8.8 83420,83421 2a74A 643 7.72e+01 1k3iA 656 7.78e+01 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2cfxA 144 7.78e+01 1hxxA 340 7.81e+01 2omf f.4.3.1 61385 1f2tB 148 7.82e+01 1f2tB 1wr2A 238 7.90e+01 1fepA 724 7.92e+01 1fepA f.4.3.3 43808 1nox 205 7.92e+01 1nox d.90.1.1 40242 1gxuA 91 7.95e+01 d.58.10.1 76378 1nr0A 611 8.06e+01 b.69.4.1,b.69.4.1 86078,86079 2aa4A 289 8.09e+01 1c0pA 363 8.14e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1viaA 175 8.18e+01 c.37.1.2 100754 2cwsA 237 8.30e+01 1vbkA 307 8.45e+01 1is3A 135 8.47e+01 b.29.1.3 76773 1zt3A 80 8.50e+01 1uzxA 169 8.50e+01 d.20.1.2 100238 2f06A 144 8.55e+01 1pm1X 180 8.55e+01 b.60.1.1 104189 1cvrA 435 8.56e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1z0sA 278 8.61e+01 2f4pA 147 8.74e+01 2f4nA 273 8.82e+01 2c4xA 260 8.82e+01 1e0tA 470 8.91e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146