# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fhqA 141 2.89e-09 1dnlA 199 3.38e-09 1ci0A b.45.1.1 25753 1g79A 218 5.28e-09 1ci0A b.45.1.1 25752 1rfeA 162 1.44e-08 1ty9A 222 1.04e-07 1nrgA 261 1.73e-07 b.45.1.1 80694 1vl7A 157 3.65e-07 b.45.1.1 108732 2fg9A 178 5.36e-06 2aq6A 147 2.59e-05 1w9aA 147 2.64e-05 2asfA 137 6.25e-05 2furA 209 7.43e-05 1xhnA 184 8.60e-04 2arzA 247 1.82e-03 1flmA 122 1.57e-01 1axj b.45.1.1 25747 2a1fA 247 1.61e-01 1ejeA 192 6.00e-01 1ejeA b.45.1.2 25757 2bneA 241 1.77e+00 2f6kA 307 2.70e+00 1d2fA 390 4.00e+00 1d2fA c.67.1.3 34411 2erfA 209 4.28e+00 1w1hA 151 4.62e+00 1vgyA 393 5.16e+00 c.56.5.4,d.58.19.1 100620,100621 1vc1A 110 6.43e+00 c.13.2.1 108493 1zirA 173 6.51e+00 1v0wA 506 7.07e+00 d.136.1.2,d.136.1.2 108220,108221 1ylnA 252 7.57e+00 1sx5A 244 7.71e+00 c.52.1.2 99023 1zkjA 359 7.82e+00 1rgzA 363 8.01e+00 e.3.1.1 97457 1v54B 227 8.11e+00 b.6.1.2,f.17.2.1 100322,100323 1amm 174 9.72e+00 1amm b.11.1.1,b.11.1.1 23587,23588 1l3iA 192 9.89e+00 c.66.1.22 77676 2bv2A 83 1.02e+01 1zybA 232 1.07e+01 2ahuA 531 1.11e+01 1vlyA 338 1.14e+01 b.44.2.1,d.250.1.1 108871,108872 1rl6A 177 1.23e+01 1rl6A d.141.1.1,d.141.1.1 41473,41474 1nmeA 146 1.24e+01 c.17.1.1 85874 1rloA 271 1.30e+01 1cbs 137 1.32e+01 1hmt b.60.1.2 27201 1z2wA 192 1.44e+01 1s5jA 847 1.49e+01 1oflA 481 1.52e+01 b.80.1.4 103934 2bjrA 368 1.56e+01 1yfsA 465 1.58e+01 2eu9A 355 1.65e+01 1j71A 334 1.66e+01 1eagA b.50.1.2 62669 1x72A 334 1.71e+01 d.126.1.6 109495 1aly 146 1.78e+01 1aly b.22.1.1 23856 1ockA 412 1.81e+01 c.117.1.1 86802 1c7sA 858 1.84e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1m8uA 173 1.89e+01 b.11.1.1,b.11.1.1 91233,91234 1r6xA 395 2.03e+01 b.122.1.3,c.26.1.5 97167,97168 1t77A 414 2.14e+01 1tfr 305 2.18e+01 1tfr a.60.7.1,c.120.1.2 18081,33351 1c8uA 285 2.24e+01 1c8uA d.38.1.3,d.38.1.3 38547,38548 1bouB 302 2.26e+01 1bouB c.56.6.1 33859 1i0rA 169 2.31e+01 1i0rA b.45.1.2 61489 1rlmA 271 2.32e+01 2chnA 716 2.41e+01 2gefA 217 2.46e+01 1twfK 120 2.49e+01 1z90A 469 2.55e+01 1c1lA 136 2.55e+01 1c1lA b.29.1.3 24219 3fib 249 2.59e+01 3fib d.171.1.1 42455 1ye8A 178 2.71e+01 1e4iA 447 2.77e+01 1e70M c.1.8.4 59225 2cmuA 342 2.79e+01 1yymG 313 2.81e+01 2giyA 191 2.85e+01 1zdzA 302 2.86e+01 1p80A 753 3.00e+01 c.23.16.3,e.5.1.1 94337,94338 1kgdA 180 3.00e+01 c.37.1.1 68582 1v30A 124 3.04e+01 1w6sA 599 3.14e+01 1zd7A 159 3.37e+01 1wzoA 246 3.37e+01 1di6A 195 3.53e+01 1di6A c.57.1.1 33863 1udzA 182 3.80e+01 b.51.1.1 99239 1wnyA 186 3.85e+01 2f15A 96 3.89e+01 1mjfA 281 3.95e+01 c.66.1.17 79198 1q3iA 214 4.06e+01 d.220.1.1 104524 1inlA 296 4.17e+01 c.66.1.17 66220 1pvmA 184 4.24e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1txvA 452 4.29e+01 1jyhA 157 4.31e+01 d.60.1.3 71956 1c7qA 445 4.35e+01 2pgi c.80.1.2 35307 1yz4A 160 4.35e+01 1oacA 727 4.44e+01 1oacA b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1rgyA 360 4.45e+01 e.3.1.1 97456 1ex7A 186 4.60e+01 1gky c.37.1.1 59537 2f4qA 346 4.60e+01 2fp4B 395 4.61e+01 1gky 187 4.61e+01 1gky c.37.1.1 31839 1et9A 204 4.69e+01 1an8 b.40.2.2,d.15.6.1 25204,37793 1g5cA 170 4.69e+01 1g5cA c.53.2.1 60264 1wcdJ 441 4.74e+01 2gclA 261 4.75e+01 1vgjA 184 4.86e+01 1mw9X 592 4.93e+01 e.10.1.1 91480 1hy7A 173 4.96e+01 d.92.1.11 65957 2dcnA 311 4.99e+01 2fauA 341 5.04e+01 1yfqA 342 5.19e+01 1efvB 255 5.21e+01 1efvB c.26.2.3 31634 1zt3A 80 5.29e+01 1zx5A 300 5.40e+01 1j1lA 290 5.47e+01 b.82.1.12 90766 1ee8A 266 5.52e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1jwqA 179 5.56e+01 c.56.5.6 90921 1crzA 403 5.61e+01 1crzA b.68.4.1,c.51.2.1 27629,33211 1yqyA 523 5.64e+01 1w3oA 216 5.81e+01 1wm1A 317 5.82e+01 c.69.1.7 109405 2g09A 297 5.96e+01 2b06A 155 6.08e+01 1lc5A 364 6.09e+01 c.67.1.1 73827 1sl4A 155 6.24e+01 d.169.1.1 105710 1gxuA 91 6.37e+01 d.58.10.1 76378 1zsyA 357 6.40e+01 2cu3A 64 6.52e+01 1knqA 175 6.55e+01 c.37.1.17 72786 2ffyA 358 6.59e+01 2ae5B 528 6.64e+01 1qtnA 164 6.65e+01 1pauA c.17.1.1 30999 2ghsA 326 6.74e+01 1gsoA 431 6.84e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 2cw5A 255 6.89e+01 1or0B 528 7.01e+01 1iv8A 720 7.11e+01 b.71.1.1,c.1.8.1 76842,76843 1te0A 318 7.20e+01 1okiA 210 7.25e+01 b.11.1.1,b.11.1.1 93255,93256 1u7bA 261 7.51e+01 1b7yA 350 7.52e+01 1pysA d.104.1.1 40776 1gr3A 160 7.53e+01 b.22.1.1 65476 2f91B 35 7.63e+01 1qwdA 177 7.74e+01 b.60.1.1 96471 1x89A 178 7.78e+01 1o4tA 133 7.81e+01 b.82.1.9 86622 2fpeA 62 7.82e+01 1tr8A 102 8.04e+01 4pgaA 337 8.10e+01 4pgaA c.88.1.1 35565 1kb9A 431 8.16e+01 d.185.1.1,d.185.1.1 77311,77312 1rlw 126 8.17e+01 1rlw b.7.1.1 23177 1ywxA 102 8.19e+01 1o4rA 108 8.20e+01 d.93.1.1 92469 1qo2A 241 8.31e+01 1qo2A c.1.2.1 28533 1wp5A 323 8.34e+01 1dynA 125 8.35e+01 1dynA b.55.1.1 26955 2fj8A 125 8.38e+01 1npsA 88 8.49e+01 1prs b.11.1.1 23622 1si6X 282 8.52e+01 1vheA 373 8.56e+01 b.49.3.1,c.56.5.4 100669,100670 1pmi 440 8.58e+01 1pmi b.82.1.3 28114 1d1gA 168 8.69e+01 1d1gA c.71.1.1 34889 1xdfA 157 8.87e+01