# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dnlA 199 4.22e-05 1ci0A b.45.1.1 25753 1g79A 218 6.65e-05 1ci0A b.45.1.1 25752 2fhqA 141 3.81e-04 1nrgA 261 4.31e-04 b.45.1.1 80694 1ty9A 222 4.95e-04 1t9mA 214 2.08e-03 1vl7A 157 7.83e-03 b.45.1.1 108732 1rfeA 162 8.00e-03 2aq6A 147 3.82e-02 1w9aA 147 1.35e-01 1xxoA 147 1.36e-01 2fg9A 178 6.41e-01 2asfA 137 6.66e-01 1r6xA 395 8.05e-01 b.122.1.3,c.26.1.5 97167,97168 2furA 209 9.54e-01 1flmA 122 1.32e+00 1axj b.45.1.1 25747 2arzA 247 2.04e+00 1g8fA 511 2.33e+00 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1s68A 249 5.20e+00 d.142.2.4 98591 1r55A 214 1.04e+01 1kewA 361 1.12e+01 c.2.1.2 68544 1ejeA 192 1.18e+01 1ejeA b.45.1.2 25757 1r6dA 337 1.21e+01 c.2.1.2 97148 2chnA 716 1.24e+01 1s6lA 212 1.30e+01 1xhnA 184 1.36e+01 2f96A 224 1.38e+01 1mwwA 128 1.41e+01 d.80.1.4 91483 1p42A 270 1.47e+01 d.14.1.7,d.14.1.7 87754,87755 2ddrA 306 1.68e+01 1l7mA 211 1.76e+01 c.108.1.4 73664 1j6wA 175 1.78e+01 1j98A d.185.1.2 62663 1j97A 211 1.84e+01 1f5sA c.108.1.4 62753 2giyA 191 1.98e+01 2czrA 226 2.05e+01 2fywA 267 2.26e+01 1vqzA 341 2.43e+01 1r6lA 239 2.73e+01 d.14.1.4,d.101.1.1 97153,97154 1fljA 260 2.97e+01 2cba b.74.1.1 27954 1z84A 351 3.02e+01 2cyeA 133 3.04e+01 2acvA 463 3.09e+01 1j5sA 463 3.13e+01 c.1.9.8 71580 2fa8A 105 3.17e+01 1kcvH 217 3.20e+01 b.1.1.1,b.1.1.2 72315,72316 1w1hA 151 3.22e+01 1h09A 338 3.23e+01 b.109.1.1,c.1.8.8 83420,83421 1v5rA 97 3.24e+01 1zxtA 76 3.30e+01 1ve6A 582 3.50e+01 1b7gO 340 3.66e+01 1b7gO c.2.1.3,d.81.1.1 29992,39907 1yl36 82 3.82e+01 1xwl 580 3.84e+01 1xwl c.55.3.5,e.8.1.1 33708,43001 2etjA 250 3.85e+01 2a6hA 315 4.00e+01 2adzA 178 4.02e+01 1zq7A 207 4.08e+01 1dkgA 197 4.09e+01 1dkgA b.73.1.1,h.1.9.1 27812,45626 1vajA 214 4.11e+01 1jfrA 262 4.12e+01 1jfrA c.69.1.16 34724 1eajA 126 4.17e+01 1f5wA b.1.1.1 59401 1ockA 412 4.22e+01 c.117.1.1 86802 1xdnA 277 4.25e+01 1gl4A 285 4.26e+01 d.22.1.2,g.3.11.5 65286,65287 1wb9A 800 4.26e+01 1x1oA 286 4.39e+01 1wk8A 194 4.55e+01 1vheA 373 4.57e+01 b.49.3.1,c.56.5.4 100669,100670 1vc1A 110 4.63e+01 c.13.2.1 108493 1pvtA 238 4.83e+01 c.74.1.1 95189 1xw4X 110 5.15e+01 1f5mA 180 5.23e+01 1f5mB d.110.2.1 40895 1pxfA 111 5.27e+01 b.40.4.4 88341 1okiA 210 5.36e+01 b.11.1.1,b.11.1.1 93255,93256 1lid 131 5.40e+01 1hmt b.60.1.2 27184 1enfA 212 5.42e+01 3seb b.40.2.2,d.15.6.1 25198,37787 1z6jT 211 5.42e+01 3fib 249 5.50e+01 3fib d.171.1.1 42455 1on3A 523 5.58e+01 c.14.1.4,c.14.1.4 87107,87108 1xw3A 110 5.59e+01 1wi5A 119 5.63e+01 1pg4A 652 5.66e+01 e.23.1.1 88067 1d2fA 390 5.69e+01 1d2fA c.67.1.3 34411 1havA 217 5.82e+01 1havA b.47.1.4 26423 1yzsA 121 5.88e+01 1wnyA 186 5.97e+01 1ka1A 357 6.01e+01 e.7.1.1 68369 1oc2A 348 6.02e+01 c.2.1.2 92765 1kepA 348 6.12e+01 c.2.1.2 68536 1mi8A 158 6.26e+01 b.86.1.2 91279 1wd5A 208 6.32e+01 1q8iA 783 6.48e+01 c.55.3.5,e.8.1.1 96208,96209 1et9A 204 6.68e+01 1an8 b.40.2.2,d.15.6.1 25204,37793 1wndA 495 6.69e+01 2cxvA 219 6.84e+01 2f7tA 227 6.90e+01 1u4bA 580 6.95e+01 c.55.3.5,e.8.1.1 107664,107665 1nk4A 580 6.98e+01 c.55.3.5,e.8.1.1 91923,91924 1l3sA 580 6.98e+01 c.55.3.5,e.8.1.1 84521,84522 1u0kA 288 6.99e+01 d.21.1.2,d.21.1.2 107547,107548 1jwqA 179 7.08e+01 c.56.5.6 90921 1pgl1 185 7.35e+01 1qgxA 357 7.36e+01 1qgxA e.7.1.1 42973 1kr7A 110 7.38e+01 a.1.1.4 72890 1udzA 182 7.39e+01 b.51.1.1 99239 1bkpA 278 7.41e+01 1bkpA d.117.1.1 41029 1h4uA 265 7.41e+01 1h4uA d.22.1.2,g.3.11.5 60622,60623 1qa7A 217 7.42e+01 1havA b.47.1.4 26425 1vgyA 393 7.43e+01 c.56.5.4,d.58.19.1 100620,100621 1n08A 163 7.45e+01 b.43.5.1 79730 1pkp 150 7.46e+01 1pkp d.14.1.1,d.50.1.2 37551,38787 1wqvT 218 7.50e+01 1bdfA 235 7.61e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 1vefA 395 7.64e+01 2cw9A 194 7.66e+01 2fcbA 173 7.89e+01 2fcbA b.1.1.4,b.1.1.4 21781,21782 2btvA 901 8.06e+01 2btvA e.28.1.1 43376 1regX 122 8.17e+01 1regX d.58.27.1 39406 1di2A 69 8.18e+01 1di2A d.50.1.1 38780 2d37A 176 8.19e+01 1ovnA 248 8.28e+01 a.71.1.1,c.47.1.7 93602,93603 2fibA 269 8.34e+01 3fib d.171.1.1 42457 1wduA 245 8.55e+01 d.151.1.1 109286 2c9aA 259 8.58e+01 1mkfA 382 8.76e+01 b.116.1.1 79232 1hlgA 371 8.85e+01 1hlgA c.69.1.6 34656 1aapA 58 8.88e+01 1bpi g.8.1.1 44543 1neu 124 8.99e+01 1neu b.1.1.1 19704 1wbsA 360 9.00e+01