# List of top-scoring protein chains for t04-100-30-str2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dnlA 199 7.04e-06 1ci0A b.45.1.1 25753 1g79A 218 8.62e-06 1ci0A b.45.1.1 25752 2fhqA 141 2.69e-05 1nrgA 261 3.75e-05 b.45.1.1 80694 1ty9A 222 4.89e-05 1t9mA 214 5.11e-05 1rfeA 162 5.01e-04 1vl7A 157 5.82e-04 b.45.1.1 108732 2aq6A 147 1.62e-03 1w9aA 147 3.71e-03 1xxoA 147 3.73e-03 2asfA 137 6.76e-02 2furA 209 1.03e-01 1r6xA 395 1.26e-01 b.122.1.3,c.26.1.5 97167,97168 2arzA 247 1.96e-01 2fg9A 178 2.16e-01 1g8fA 511 2.73e-01 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1flmA 122 4.38e-01 1axj b.45.1.1 25747 1ve6A 582 1.12e+00 2gc9A 179 2.38e+00 1xhnA 184 2.59e+00 2f96A 224 3.01e+00 1ejeA 192 3.76e+00 1ejeA b.45.1.2 25757 2chnA 716 4.14e+00 1iz0A 302 5.36e+00 b.35.1.2,c.2.1.1 83821,83822 1ri6A 343 5.73e+00 b.69.11.1 97503 1zxtA 76 6.09e+00 2czrA 226 6.36e+00 1ka1A 357 7.06e+00 e.7.1.1 68369 1mi8A 158 7.77e+00 b.86.1.2 91279 1qgxA 357 7.91e+00 1qgxA e.7.1.1 42973 1vajA 214 8.48e+00 1j6wA 175 8.56e+00 1j98A d.185.1.2 62663 1zq7A 207 9.00e+00 1u4bA 580 9.76e+00 c.55.3.5,e.8.1.1 107664,107665 1j5sA 463 1.01e+01 c.1.9.8 71580 1pgl1 185 1.07e+01 1vheA 373 1.07e+01 b.49.3.1,c.56.5.4 100669,100670 1v72A 356 1.29e+01 1v5rA 97 1.36e+01 1nk4A 580 1.40e+01 c.55.3.5,e.8.1.1 91923,91924 1l3sA 580 1.41e+01 c.55.3.5,e.8.1.1 84521,84522 2giyA 191 1.42e+01 1di2A 69 1.42e+01 1di2A d.50.1.1 38780 1xwl 580 1.43e+01 1xwl c.55.3.5,e.8.1.1 33708,43001 1kcvH 217 1.45e+01 b.1.1.1,b.1.1.2 72315,72316 2ddrA 306 1.48e+01 1qa7A 217 1.48e+01 1havA b.47.1.4 26425 1kxgA 152 1.71e+01 b.22.1.1 73145 2av5A 120 1.77e+01 1vc1A 110 1.82e+01 c.13.2.1 108493 2cxvA 219 1.86e+01 1neu 124 1.87e+01 1neu b.1.1.1 19704 1qrrA 394 1.94e+01 1qrrA c.2.1.2 29824 1bmv1 198 1.96e+01 1bmv1 1svpA 161 1.97e+01 1svpA b.47.1.3 26384 1i24A 404 1.97e+01 c.2.1.2 83663 1i58A 189 2.08e+01 1b3qA d.122.1.3 61773 1ag6 99 2.09e+01 1plc b.6.1.1 22857 2fibA 269 2.21e+01 3fib d.171.1.1 42457 1umuA 116 2.22e+01 1umuA b.87.1.1 28382 2cx1A 187 2.23e+01 1myt 146 2.29e+01 1a6m a.1.1.2 15207 1kr7A 110 2.31e+01 a.1.1.4 72890 1kewA 361 2.40e+01 c.2.1.2 68544 1dhr 241 2.43e+01 1dhr c.2.1.2 29832 2d37A 176 2.44e+01 1rkiA 102 2.44e+01 1q7lA 198 2.48e+01 c.56.5.4 96044 1w1hA 151 2.50e+01 1sotA 320 2.58e+01 b.36.1.4,b.47.1.1 105852,105853 1zs7A 190 2.75e+01 1s68A 249 2.76e+01 d.142.2.4 98591 1fljA 260 2.77e+01 2cba b.74.1.1 27954 1lbvA 252 2.79e+01 e.7.1.1 73813 3fib 249 2.87e+01 3fib d.171.1.1 42455 2adzA 178 2.91e+01 1bypA 99 2.91e+01 1plc b.6.1.1 22858 1z84A 351 2.92e+01 2fcbA 173 2.92e+01 2fcbA b.1.1.4,b.1.1.4 21781,21782 2ck3A 510 2.96e+01 1havA 217 2.99e+01 1havA b.47.1.4 26423 1cwvA 492 3.02e+01 1cwvA b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 1u0sA 86 3.03e+01 d.58.24.1 107565 1okiA 210 3.05e+01 b.11.1.1,b.11.1.1 93255,93256 1rfmA 344 3.08e+01 c.122.1.1 97385 1jwqA 179 3.15e+01 c.56.5.6 90921 1vgyA 393 3.17e+01 c.56.5.4,d.58.19.1 100620,100621 1z02A 446 3.20e+01 1hdr 244 3.20e+01 1dhr c.2.1.2 29837 1regX 122 3.20e+01 1regX d.58.27.1 39406 1mkfA 382 3.29e+01 b.116.1.1 79232 2bduA 297 3.34e+01 1jfuA 186 3.34e+01 c.47.1.10 62940 1ttwA 138 3.39e+01 d.198.1.1 107308 1r6lA 239 3.45e+01 d.14.1.4,d.101.1.1 97153,97154 1jofA 365 3.50e+01 b.69.10.1 71775 2lhb 149 3.50e+01 2fal a.1.1.2 15597 2a6hA 315 3.52e+01 2cw9A 194 3.53e+01 1jetA 517 3.60e+01 1jevA c.94.1.1 35718 1f2tB 148 3.67e+01 1f2tB 1j31A 262 3.71e+01 d.160.1.2 90808 1et9A 204 3.77e+01 1an8 b.40.2.2,d.15.6.1 25204,37793 1ru8A 232 3.78e+01 c.26.2.1 97849 2vhbA 146 3.79e+01 2vhbA a.1.1.2 15629 1y0yA 353 3.84e+01 1oapA 109 3.88e+01 d.79.7.1 92706 1n3lA 372 3.90e+01 c.26.1.1 79966 2g0wA 296 3.91e+01 1ojrA 274 3.92e+01 c.74.1.1 93147 1r75A 141 3.93e+01 b.134.1.1 97189 1eajA 126 3.94e+01 1f5wA b.1.1.1 59401 1yl36 82 3.97e+01 2ai4A 119 3.99e+01 1q6hA 224 4.00e+01 d.26.1.1 95975 2atrA 138 4.10e+01 2fywA 267 4.12e+01 1glcG 501 4.17e+01 1glcG c.55.1.4,c.55.1.4 33519,33520 2cyeA 133 4.18e+01 1vraB 215 4.20e+01 1bdfA 235 4.25e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 1fg7A 356 4.27e+01 1gewA c.67.1.1 59819 1z6jT 211 4.29e+01 1mup 166 4.31e+01 1mup b.60.1.1 27133 1bueA 265 4.34e+01 1btl e.3.1.1 42727 1pkp 150 4.36e+01 1pkp d.14.1.1,d.50.1.2 37551,38787 2ci1A 275 4.43e+01 1z47A 355 4.50e+01 1k0wA 231 4.51e+01 c.74.1.1 77220 2f7tA 227 4.52e+01 1dyqA 234 4.52e+01 3seb b.40.2.2,d.15.6.1 59140,59141 1am2 199 4.53e+01 1am2 b.86.1.2 28381 1s1dA 331 4.57e+01 b.67.3.1 98344 1wqvT 218 4.59e+01 1b7gO 340 4.60e+01 1b7gO c.2.1.3,d.81.1.1 29992,39907 1xfoA 357 4.63e+01 1xdnA 277 4.67e+01 1zdrA 164 4.72e+01 1dkgA 197 4.77e+01 1dkgA b.73.1.1,h.1.9.1 27812,45626 1v30A 124 4.80e+01 1khcA 147 4.84e+01 b.34.9.2 68608 1q6uA 245 4.85e+01 d.26.1.1 95998 1vhoA 346 4.85e+01 b.49.3.1,c.56.5.4 100694,100695 1e5kA 201 4.92e+01 1fr9A c.68.1.8 34578 1yhuB 144 4.95e+01 1up7A 417 4.96e+01 1hyxH 224 5.00e+01 1igtB b.1.1.1,b.1.1.2 20167,21191 1qniA 581 5.03e+01 1qniA b.6.1.4,b.69.3.1 23042,27642 1pvtA 238 5.06e+01 c.74.1.1 95189 2a6hD 1524 5.08e+01 1up6A 416 5.10e+01 c.2.1.5,d.162.1.2 107976,107977 1te0A 318 5.17e+01 1ynfA 458 5.18e+01 2fnuA 375 5.23e+01 2fy6A 143 5.24e+01 1udzA 182 5.26e+01 b.51.1.1 99239 1qy1A 174 5.28e+01 b.60.1.1 96568 1hlgA 371 5.29e+01 1hlgA c.69.1.6 34656 1q32A 544 5.33e+01 d.136.1.3,d.136.1.3 104507,104508 1kt6A 183 5.33e+01 b.60.1.1 84466 1r1mA 164 5.34e+01 d.79.7.1 96820 1p5dX 463 5.36e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1x1oA 286 5.48e+01 1zndA 174 5.49e+01 1wb9A 800 5.52e+01 1i05A 180 5.55e+01 1mup b.60.1.1 27130 2f1rA 171 5.56e+01 1jv4A 162 5.58e+01 b.60.1.1 67343 1aapA 58 5.60e+01 1bpi g.8.1.1 44543 1k8qA 377 5.69e+01 c.69.1.6 72177 1wdjA 187 5.80e+01 1i06A 180 5.80e+01 1mup b.60.1.1 27131 1lid 131 5.84e+01 1hmt b.60.1.2 27184 1u2hA 99 5.86e+01 1an9A 340 5.86e+01 1an9A c.4.1.2,d.16.1.3 30617,37904 1sat 471 5.93e+01 1sat b.80.7.1,d.92.1.6 28014,40300 1ww7A 160 5.96e+01 2bexA 460 5.97e+01 1xw4X 110 6.02e+01 2g09A 297 6.03e+01 1wzoA 246 6.05e+01 1enfA 212 6.06e+01 3seb b.40.2.2,d.15.6.1 25198,37787 1gewA 356 6.08e+01 1gewA c.67.1.1 60470 2a1fA 247 6.10e+01 1f5mA 180 6.12e+01 1f5mB d.110.2.1 40895 1j98A 157 6.15e+01 1j98A d.185.1.2 62755 1gcvB 136 6.17e+01 1cg5B a.1.1.2 15589 1wk8A 194 6.18e+01 1w24A 182 6.20e+01 1qs1A 462 6.21e+01 1qs1A d.166.1.1,d.166.1.1 42260,42261 1h4uA 265 6.25e+01 1h4uA d.22.1.2,g.3.11.5 60622,60623 1aa8A 347 6.25e+01 1an9A 1ovnA 248 6.26e+01 a.71.1.1,c.47.1.7 93602,93603 1s6lA 212 6.27e+01 1l7mA 211 6.28e+01 c.108.1.4 73664 2fvgA 340 6.32e+01 1g7oA 215 6.32e+01 1g7oA a.45.1.1,c.47.1.5 60332,60333 1p42A 270 6.33e+01 d.14.1.7,d.14.1.7 87754,87755 2ewcA 126 6.39e+01 1k8tA 510 6.44e+01 e.41.1.1 68316 2fcr 173 6.44e+01 1rcf c.23.5.1 31151 2a10A 125 6.48e+01 1plc 99 6.58e+01 1plc b.6.1.1 22846 1us5A 314 6.63e+01 c.94.1.1 99856 1wf3A 301 6.64e+01 1dzkA 157 6.64e+01 1obpA b.60.1.1 27096 1iuz 98 6.67e+01 1plc b.6.1.1 22861 1vjzA 341 6.74e+01 c.1.8.3 100838 1hz6A 72 6.77e+01 2ptl d.15.7.1 61429 1q1aA 289 6.79e+01 c.31.1.5 95561 1jnyA 435 6.84e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1cg5B 141 6.86e+01 1cg5B a.1.1.2 15585 1j97A 211 6.90e+01 1f5sA c.108.1.4 62753 2al6A 375 6.92e+01 2bkrA 212 6.93e+01 1v4pA 157 7.02e+01 1dpe 507 7.06e+01 1dpe c.94.1.1 35799 1fxkC 133 7.09e+01 1fxkC a.2.5.1 15702 1n9pA 207 7.12e+01 b.1.18.16 80343 1kdj 102 7.16e+01 1plc b.6.1.1 22864 1vhsA 175 7.22e+01 d.108.1.1 100698 1qwtA 255 7.26e+01 b.26.1.3 96501 1w96A 554 7.28e+01 2bnfB 241 7.30e+01 1m4jA 142 7.36e+01 d.109.1.2 78602 1aqb 183 7.39e+01 1aqb b.60.1.1 27084 1ockA 412 7.60e+01 c.117.1.1 86802 1un8A 552 7.61e+01 c.119.1.2,a.208.1.1 103806,99661 1jyhA 157 7.68e+01 d.60.1.3 71956 1gl4A 285 7.70e+01 d.22.1.2,g.3.11.5 65286,65287 2bneA 241 7.72e+01 1z2kA 109 7.75e+01 2bltA 361 7.82e+01 1gceA e.3.1.1 42739 1pk6B 132 8.03e+01 b.22.1.1 94802 1i2sA 282 8.08e+01 e.3.1.1 71104 2aenA 164 8.24e+01 1lwjA 441 8.33e+01 b.71.1.1,c.1.8.1 74303,74304 1sv6A 269 8.34e+01 d.177.1.1 106043 2b4wA 315 8.36e+01 1i8aA 189 8.37e+01 1i82A b.1.9.2 61951 2aehA 369 8.37e+01 1mxmA 254 8.51e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1e3mA 800 8.52e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19075,32389,33746,39747 7ahlA 293 8.59e+01 7ahlA f.6.1.1 43812 2cn3A 737 8.62e+01 1ofuA 320 8.63e+01 c.32.1.1,d.79.2.1 86972,86973 1wpgA 994 8.67e+01 1yirA 408 8.72e+01 2g8lA 299 8.72e+01 2amhA 207 8.72e+01 1u0kA 288 8.74e+01 d.21.1.2,d.21.1.2 107547,107548 1xcrA 316 8.84e+01 1v0wA 506 8.99e+01 d.136.1.2,d.136.1.2 108220,108221 1zybA 232 8.99e+01