# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dnlA 199 4.16e-05 1ci0A b.45.1.1 25753 1g79A 218 4.33e-05 1ci0A b.45.1.1 25752 2fhqA 141 2.51e-04 1nrgA 261 2.60e-04 b.45.1.1 80694 1ty9A 222 3.81e-04 1t9mA 214 5.11e-04 1rfeA 162 1.37e-03 1vl7A 157 4.37e-03 b.45.1.1 108732 2aq6A 147 6.82e-03 1w9aA 147 1.73e-02 1xxoA 147 1.74e-02 2fg9A 178 3.75e-01 2furA 209 3.83e-01 2asfA 137 5.17e-01 1r6xA 395 6.82e-01 b.122.1.3,c.26.1.5 97167,97168 1g8fA 511 1.50e+00 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1flmA 122 2.04e+00 1axj b.45.1.1 25747 1z6jT 211 4.22e+00 2arzA 247 4.27e+00 2chnA 716 6.34e+00 1xhnA 184 6.88e+00 1zxtA 76 7.52e+00 1fljA 260 8.23e+00 2cba b.74.1.1 27954 2cxvA 219 9.69e+00 1ka1A 357 1.00e+01 e.7.1.1 68369 1wqvT 218 1.03e+01 1qgxA 357 1.04e+01 1qgxA e.7.1.1 42973 1kewA 361 1.20e+01 c.2.1.2 68544 2f96A 224 1.33e+01 1d2fA 390 1.33e+01 1d2fA c.67.1.3 34411 2giyA 191 1.34e+01 1qa7A 217 1.48e+01 1havA b.47.1.4 26425 1ejeA 192 1.49e+01 1ejeA b.45.1.2 25757 1dkgA 197 1.58e+01 1dkgA b.73.1.1,h.1.9.1 27812,45626 2acvA 463 1.62e+01 2gc9A 179 1.63e+01 1zq7A 207 1.64e+01 1di2A 69 1.81e+01 1di2A d.50.1.1 38780 1j6wA 175 1.92e+01 1j98A d.185.1.2 62663 1umuA 116 1.94e+01 1umuA b.87.1.1 28382 2bduA 297 1.97e+01 2hft 218 1.97e+01 1boy b.1.2.1,b.1.2.1 21951,21952 1p5dX 463 2.11e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2ai4A 119 2.14e+01 1v5rA 97 2.19e+01 1u9cA 224 2.32e+01 1v72A 356 2.38e+01 2d37A 176 2.40e+01 1havA 217 2.43e+01 1havA b.47.1.4 26423 1ri6A 343 2.51e+01 b.69.11.1 97503 2fywA 267 2.56e+01 1s6lA 212 2.58e+01 1l3sA 580 2.71e+01 c.55.3.5,e.8.1.1 84521,84522 1vheA 373 2.71e+01 b.49.3.1,c.56.5.4 100669,100670 1xwl 580 2.71e+01 1xwl c.55.3.5,e.8.1.1 33708,43001 1nk4A 580 2.72e+01 c.55.3.5,e.8.1.1 91923,91924 1u4bA 580 2.73e+01 c.55.3.5,e.8.1.1 107664,107665 1r6lA 239 2.77e+01 d.14.1.4,d.101.1.1 97153,97154 2g09A 297 2.78e+01 2adzA 178 2.79e+01 1b7gO 340 2.79e+01 1b7gO c.2.1.3,d.81.1.1 29992,39907 1rw7A 243 2.85e+01 c.23.16.2 97963 1ru8A 232 2.87e+01 c.26.2.1 97849 1ve6A 582 2.91e+01 1yl36 82 2.91e+01 1j5sA 463 2.97e+01 c.1.9.8 71580 1mwwA 128 3.13e+01 d.80.1.4 91483 1qvzA 237 3.21e+01 c.23.16.2 96453 1w1hA 151 3.22e+01 1bdfA 235 3.26e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 1ej6D 418 3.40e+01 i.7.1.1 45970 1h4uA 265 3.41e+01 1h4uA d.22.1.2,g.3.11.5 60622,60623 1k2yX 463 3.51e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1vqzA 341 3.65e+01 1r6dA 337 3.71e+01 c.2.1.2 97148 2a6hA 315 3.83e+01 2fibA 269 3.96e+01 3fib d.171.1.1 42457 3fib 249 3.97e+01 3fib d.171.1.1 42455 1lid 131 4.01e+01 1hmt b.60.1.2 27184 1wndA 495 4.02e+01 2a1fA 247 4.02e+01 1v30A 124 4.03e+01 1r55A 214 4.05e+01 1ovnA 248 4.09e+01 a.71.1.1,c.47.1.7 93602,93603 1iz0A 302 4.11e+01 b.35.1.2,c.2.1.1 83821,83822 1ri7A 171 4.14e+01 a.4.5.32,d.58.4.2 97504,97505 1kr7A 110 4.14e+01 a.1.1.4 72890 1eajA 126 4.18e+01 1f5wA b.1.1.1 59401 1ww7A 160 4.22e+01 2cyeA 133 4.27e+01 1svpA 161 4.41e+01 1svpA b.47.1.3 26384 1f2tB 148 4.43e+01 1f2tB 2bdeA 470 4.44e+01 1k8qA 377 4.47e+01 c.69.1.6 72177 1myt 146 4.49e+01 1a6m a.1.1.2 15207 2f7tA 227 4.53e+01 1wkcA 184 4.63e+01 1ttwA 138 4.67e+01 d.198.1.1 107308 2ci1A 275 4.68e+01 1hlgA 371 4.70e+01 1hlgA c.69.1.6 34656 1vraB 215 4.76e+01 1danU 121 4.76e+01 1boy b.1.2.1 21954 2btvA 901 4.79e+01 2btvA e.28.1.1 43376 1r1mA 164 4.80e+01 d.79.7.1 96820 2arkA 188 4.82e+01 1wduA 245 4.83e+01 d.151.1.1 109286 1do6A 124 4.84e+01 1do6A b.1.13.1 22361 1ockA 412 4.85e+01 c.117.1.1 86802 1c4oA 664 4.92e+01 1d2mA c.37.1.19,c.37.1.19 32415,32416 1kcvH 217 4.93e+01 b.1.1.1,b.1.1.2 72315,72316 1vc1A 110 5.01e+01 c.13.2.1 108493 1j97A 211 5.10e+01 1f5sA c.108.1.4 62753 1vajA 214 5.12e+01 1kxgA 152 5.18e+01 b.22.1.1 73145 1pkp 150 5.21e+01 1pkp d.14.1.1,d.50.1.2 37551,38787 1zhxA 438 5.24e+01 1l7mA 211 5.24e+01 c.108.1.4 73664 1jofA 365 5.25e+01 b.69.10.1 71775 1go7P 462 5.32e+01 b.80.7.1,d.92.1.6 76245,76246 1k7iA 479 5.34e+01 b.80.7.1,d.92.1.6 77281,77282 1xksA 450 5.40e+01 1okiA 210 5.48e+01 b.11.1.1,b.11.1.1 93255,93256 1g7oA 215 5.55e+01 1g7oA a.45.1.1,c.47.1.5 60332,60333 2bexA 460 5.62e+01 1u2hA 99 5.68e+01 1f06A 320 5.71e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1wdjA 187 5.85e+01 1p42A 270 5.90e+01 d.14.1.7,d.14.1.7 87754,87755 2czrA 226 5.92e+01 1t0qC 86 5.94e+01 d.15.12.1 106222 1q7lA 198 5.96e+01 c.56.5.4 96044 2lhb 149 6.17e+01 2fal a.1.1.2 15597 1rfmA 344 6.18e+01 c.122.1.1 97385 1vm6A 228 6.27e+01 c.2.1.3,d.81.1.3 108876,108877 1pvtA 238 6.32e+01 c.74.1.1 95189 1mkfA 382 6.38e+01 b.116.1.1 79232 2vhbA 146 6.39e+01 2vhbA a.1.1.2 15629 2etjA 250 6.40e+01 1dqiA 124 6.41e+01 1do6A b.1.13.1 22357 1et9A 204 6.44e+01 1an8 b.40.2.2,d.15.6.1 25204,37793 1wb9A 800 6.55e+01 1q1aA 289 6.64e+01 c.31.1.5 95561 2gr8A 99 6.75e+01 1khbA 625 6.76e+01 c.91.1.1,c.109.1.1 68606,68607 1n3lA 372 6.86e+01 c.26.1.1 79966 1czfA 362 6.89e+01 1czfA b.80.1.3 28031 1i58A 189 6.97e+01 1b3qA d.122.1.3 61773 1u7eB 154 6.97e+01 1cwvA 492 6.98e+01 1cwvA b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 1g7nA 131 7.00e+01 b.60.1.2 83274 1qamA 244 7.02e+01 2ercA c.66.1.24 34220 1us5A 314 7.03e+01 c.94.1.1 99856 1ig3A 263 7.11e+01 1ig3A b.82.6.1,c.100.1.1 62358,62359 2fnuA 375 7.14e+01 1yhuB 144 7.14e+01 1regX 122 7.16e+01 1regX d.58.27.1 39406 1q6uA 245 7.19e+01 d.26.1.1 95998 1dzkA 157 7.20e+01 1obpA b.60.1.1 27096 1qrrA 394 7.21e+01 1qrrA c.2.1.2 29824 2ptd 298 7.26e+01 2plc c.1.18.2 29605 1jfuA 186 7.33e+01 c.47.1.10 62940 1q92A 197 7.38e+01 c.108.1.8 96250 1yfqA 342 7.39e+01 1f5mA 180 7.41e+01 1f5mB d.110.2.1 40895 1mh9A 197 7.45e+01 c.108.1.8 79118 1i24A 404 7.49e+01 c.2.1.2 83663 1dhr 241 7.56e+01 1dhr c.2.1.2 29832 1nf2A 268 7.69e+01 c.108.1.10 91849 1j3bA 529 7.72e+01 c.91.1.1,c.109.1.1 77071,77072 1cdzA 96 7.72e+01 1cdzA c.15.1.1 30925 1k9jA 139 7.83e+01 d.169.1.1 68353 1vgyA 393 7.84e+01 c.56.5.4,d.58.19.1 100620,100621 1jwqA 179 7.90e+01 c.56.5.6 90921 2ghrA 302 7.97e+01 1lbvA 252 8.02e+01 e.7.1.1 73813 1j5uA 136 8.07e+01 d.208.1.1 71584 1h7zA 194 8.18e+01 1qhvA b.21.1.1 60733 2fy6A 143 8.18e+01 1tl2A 236 8.23e+01 1tl2A b.67.1.1 27541 1qtnA 164 8.30e+01 1pauA c.17.1.1 30999 1gl4A 285 8.46e+01 d.22.1.2,g.3.11.5 65286,65287 1u4cA 349 8.47e+01 b.69.4.2 107666 1xw4X 110 8.52e+01 2fa8A 105 8.55e+01 1zybA 232 8.63e+01 1e3mA 800 8.64e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19075,32389,33746,39747 1qwdA 177 8.90e+01 b.60.1.1 96471 1dleA 298 8.97e+01 1dleA b.47.1.2 26312 1m4jA 142 8.98e+01 d.109.1.2 78602