Best Alignments for T0329

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1jud/T0329-1jud-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jud/T0329-1jud-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.2300e-227.60e-88 1qq5A c.108.1.1
2ah5A/T0329-2ah5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ah5A/T0329-2ah5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2314e-211.04e-108
2gfhA/T0329-2gfhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gfhA/T0329-2gfhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.9171e-209.08e-99
2fdrA/T0329-2fdrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fdrA/T0329-2fdrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6203e-202.59e-99
1te2A/T0329-1te2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1te2A/T0329-1te2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.3801e-201.55e-102 c.108.1.6
1swvA/T0329-1swvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1swvA/T0329-1swvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3266e-194.79e-95
1fezA/T0329-1fezA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1fezA/T0329-1fezA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5355e-191.07e-98 1fezA c.108.1.3
1x42A/T0329-1x42A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1x42A/T0329-1x42A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.0468e-197.85e-93
2go7A/T0329-2go7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2go7A/T0329-2go7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1287e-176.97e-94
2fi1A/T0329-2fi1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2fi1A/T0329-2fi1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4871e-175.33e-86

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001