Best Alignments for T0328

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2gvkA/T0328-2gvkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gvkA/T0328-2gvkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4836e-424.68e-137
1t0tV/T0328-1t0tV-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t0tV/T0328-1t0tV-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2042e+003.20e-22 d.58.4.10
1r8gA/T0328-1r8gA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1r8gA/T0328-1r8gA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4960e+001.46e-11 d.128.1.3
2cb2A/T0328-2cb2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2cb2A/T0328-2cb2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.1410e+005.07e-10
1e08A/T0328-1e08A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1e08A/T0328-1e08A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.5326e+002.13e-18 i.4.1.1
1omzA/T0328-1omzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1omzA/T0328-1omzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0139e+012.19e-06 c.68.1.15
2bl9A/T0328-2bl9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bl9A/T0328-2bl9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0406e+012.29e-10
1iq4A/T0328-1iq4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1iq4A/T0328-1iq4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0528e+011.55e-08 1iq4A d.77.1.1
1nriA/T0328-1nriA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1nriA/T0328-1nriA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3000e+017.45e-10 c.80.1.3
1m5sA/T0328-1m5sA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1m5sA/T0328-1m5sA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5126e+011.22e-14 d.58.33.1
d.58.33.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001