# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gvkA 317 4.57e-42 1jeoA 180 5.61e-01 c.80.1.3 66611 1o12A 376 1.20e+00 b.92.1.5,c.1.9.10 80758,80759 1gggA 226 1.72e+00 1lst c.94.1.1 35817 1gggB 226 1.74e+00 1lst c.94.1.1 35818 1omzA 293 1.76e+00 c.68.1.15 87093 1nriA 306 2.28e+00 c.80.1.3 86123 1sqiA 393 2.81e+00 d.32.1.3,d.32.1.3 105914,105915 1wdnA 226 3.88e+00 1lst c.94.1.1 35816 2gnpA 266 3.92e+00 1vimA 200 5.08e+00 c.80.1.3 100758 1ipaA 274 5.30e+00 c.116.1.1,d.79.3.3 71254,71255 2chnA 716 5.77e+00 1dqsA 393 6.90e+00 1dqsA e.22.1.1 43347 1vggA 161 7.73e+00 1cxvA 164 9.64e+00 1ck7A d.92.1.11 40404 1ag8A 499 1.05e+01 1bpwA c.82.1.1 35341 1umsA 174 1.18e+01 1hfc d.92.1.11 40368 1fpqA 372 1.20e+01 1fpqA a.4.5.29,c.66.1.12 59947,59948 1sg6A 393 1.25e+01 e.22.1.1 105522 1sc6A 404 1.27e+01 1hy7A 173 1.42e+01 d.92.1.11 65957 1a6r 471 1.49e+01 3gcb d.3.1.1 37033 3gcb 470 1.49e+01 3gcb d.3.1.1 37032 1b8yA 167 1.49e+01 1hfc d.92.1.11 40377 1psdA 409 1.56e+01 1psdA c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2b34A 199 1.57e+01 1mp9A 198 1.69e+01 d.129.1.1,d.129.1.1 91385,91386 2bgiA 272 1.71e+01 1xnaA 183 1.80e+01 1xnaA b.18.1.8 23773 1l1sA 113 1.83e+01 c.114.1.1 73484 2cg4A 152 1.86e+01 1wxxA 382 1.97e+01 2dri 271 2.04e+01 2dri c.93.1.1 35637 1x7oA 287 2.10e+01 2bl9A 238 2.12e+01 1atiA 505 2.12e+01 1atiA c.51.1.1,d.104.1.1 33196,40745 1k75A 434 2.18e+01 c.82.1.2 68253 1gcb 454 2.19e+01 3gcb d.3.1.1 37034 1gkkA 297 2.21e+01 c.69.1.2 65248 1wu7A 434 2.23e+01 1iq4A 179 2.26e+01 1iq4A d.77.1.1 62641 1kaeA 434 2.27e+01 c.82.1.2 72247 1inlA 296 2.27e+01 c.66.1.17 66220 1rlhA 173 2.31e+01 d.256.1.1 97646 1atiB 505 2.36e+01 1atiA c.51.1.1,d.104.1.1 33197,40746 1gklA 297 2.36e+01 c.69.1.2 65250 1wb4A 297 2.40e+01 1m3sA 186 2.52e+01 c.80.1.3 78573 1kskA 234 2.63e+01 d.66.1.5,d.265.1.3 72920,90389 1nnhA 294 2.65e+01 d.104.1.1 92005 2blcA 238 2.72e+01 1ffkF 157 2.73e+01 1ffkF d.41.4.1 38628 1jq3A 296 2.77e+01 c.66.1.17 67079 1zdzA 302 2.78e+01 1q1aA 289 2.81e+01 c.31.1.5 95561 2cb2A 318 2.85e+01 1kezA 300 3.03e+01 c.69.1.22 68546 1hcrA 52 3.06e+01 1hcrA a.4.1.2 16020 1fj2A 232 3.15e+01 1auoA c.69.1.14 34720 1ohtA 215 3.17e+01 d.118.1.1 87036 1m0wA 491 3.24e+01 c.30.1.4,d.142.1.6 78363,78364 3ladA 476 3.27e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1qwrA 319 3.28e+01 b.82.1.3 96491 1jkoC 52 3.29e+01 a.4.1.2 66809 1vhh 162 3.35e+01 1vhh d.65.1.2 39550 1fp1D 372 3.44e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 2cbiA 594 3.55e+01 1auoA 218 3.58e+01 1auoA c.69.1.14 34716 1uf2A 1019 3.62e+01 e.28.1.2 99289 1fmaE 150 3.64e+01 1fmaE d.41.5.1 38630 1j27A 102 3.64e+01 d.58.50.1 90778 1v64A 108 3.69e+01 a.21.1.1 108392 1aurA 218 3.74e+01 1auoA c.69.1.14 34718 1rm6B 324 3.81e+01 1ni4B 341 4.01e+01 c.36.1.7,c.48.1.2 85729,85730 1fm0E 150 4.08e+01 1fmaE d.41.5.1 38629 1httA 423 4.09e+01 1adjA c.51.1.1,d.104.1.1 33178,40727 1us5A 314 4.16e+01 c.94.1.1 99856 1h8eG 272 4.20e+01 1e79G c.49.2.1 60756 1zwtA 158 4.25e+01 1udvA 89 4.32e+01 d.68.6.1 99224 1vr7A 142 4.42e+01 1ri7A 171 4.44e+01 a.4.5.32,d.58.4.2 97504,97505 1wruA 379 4.46e+01 1tluA 130 4.55e+01 d.156.1.2 107139 1zfpE 98 4.55e+01 1griA d.93.1.1 40465 1dkuA 317 4.61e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1pch 88 4.65e+01 1ptf d.94.1.1 40564 1ycdA 243 4.69e+01 1ap8 213 4.69e+01 1ap8 d.86.1.1 40151 1cqzA 554 4.72e+01 1cr6B c.69.1.11,c.108.1.2 34689,43339 1x1nA 524 4.76e+01 1d4xG 126 4.80e+01 1d0nA d.109.1.1 59109 1cur 155 4.85e+01 1rcy b.6.1.1 23021 1i1qA 520 4.89e+01 1qdlA d.161.1.1 61543 1hfs 160 4.92e+01 1hfc d.92.1.11 40370 1v4sA 455 4.92e+01 c.55.1.3,c.55.1.3 100309,100310 1yagG 125 4.94e+01 1d0nA d.109.1.1 40846 1nm1G 125 4.95e+01 d.109.1.1 80653 1xkpC 143 4.99e+01 1t0tV 248 5.01e+01 d.58.4.10 106229 1p4cA 380 5.05e+01 c.1.4.1 94100 1pl8A 356 5.06e+01 b.35.1.2,c.2.1.1 94878,94879 2bkyX 89 5.08e+01 1i19A 561 5.10e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1mo2A 294 5.10e+01 c.69.1.22 79331 2calA 154 5.25e+01 1huvA 380 5.31e+01 c.1.4.1 61277 1es6A 296 5.45e+01 1es6A b.31.1.1,b.31.1.1 83048,83049 1vddA 228 5.49e+01 e.49.1.1 108519 1e30A 155 5.51e+01 1rcy b.6.1.1 23016 1e1oA 504 5.54e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 1rw7A 243 5.58e+01 c.23.16.2 97963 1p35A 299 5.58e+01 1p35A b.28.1.1 23925 1ys4A 354 5.61e+01 1hlrA 907 5.72e+01 1souA 194 5.75e+01 c.124.1.6 105858 1r6dA 337 5.77e+01 c.2.1.2 97148 1vlbA 907 5.81e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1dlfL 113 5.86e+01 8fabA b.1.1.1 20382 2d0tA 406 5.94e+01 1o04A 500 5.95e+01 c.82.1.1 86508 1p1lA 102 5.97e+01 d.58.5.2 87695 1a3z 155 5.98e+01 1rcy b.6.1.1 23019 1rcy 151 6.05e+01 1rcy b.6.1.1 23018 1ou0A 207 6.16e+01 c.23.17.1 93536 1v2dA 381 6.18e+01 c.67.1.1 108281 1w9yA 319 6.24e+01 2ftrA 108 6.25e+01 1i1gA 141 6.25e+01 a.4.5.32,d.58.4.2 65982,65983 1jh2A 99 6.27e+01 1kmvA 186 6.29e+01 c.71.1.1 72757 1jg1A 235 6.41e+01 c.66.1.7 66661 2c2aA 258 6.41e+01 2oatA 439 6.56e+01 2dkb c.67.1.4 34452 1b76A 442 6.58e+01 1atiA c.51.1.1,d.104.1.1 33198,40747 1z08A 170 6.59e+01 1kmnD 424 6.66e+01 1adjA c.51.1.1,d.104.1.1 33185,40734 2aobA 99 7.00e+01 1g3uA 214 7.23e+01 c.37.1.1 65132 1wi1A 126 7.28e+01 1oatA 439 7.51e+01 2dkb c.67.1.4 34461 1r8gA 372 7.67e+01 d.128.1.3 104845 1griA 217 7.73e+01 1griA b.34.2.1,b.34.2.1,d.93.1.1 24531,24532,40473 2a6aA 218 7.85e+01 2byjA 439 7.92e+01 2gefA 217 7.96e+01 1lylA 504 8.09e+01 1lylA b.40.4.1,d.104.1.1 25261,40717 2bklA 695 8.15e+01 1tzeE 98 8.16e+01 1griA d.93.1.1 40468 1nh9A 87 8.27e+01 d.68.6.1 91878 2nef 136 8.27e+01 1efnB d.102.1.1 40704 1xgkA 352 8.37e+01 1l6wA 220 8.38e+01 c.1.10.1 73632 1k6xA 352 8.47e+01 c.2.1.2 68238 1jyrA 96 8.48e+01 d.93.1.1 71969 1bmbA 123 8.64e+01 1griA d.93.1.1 40466 1xrjA 261 8.98e+01