# List of top-scoring protein chains for T0328.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gvkA 317 5.63e-35 1bccA 446 1.21e-01 1be3A d.185.1.1,d.185.1.1 58946,58947 1o08A 221 1.89e+00 c.108.1.6 86525 1xt9A 212 4.87e+00 1o12A 376 5.30e+00 b.92.1.5,c.1.9.10 80758,80759 1t11A 392 5.73e+00 a.223.1.1,d.241.2.1,d.26.1.1 106236,106237,106238 2bkrA 212 6.21e+00 1sqbA 480 1.07e+01 d.185.1.1,d.185.1.1 105890,105891 1ppjA 446 1.14e+01 d.185.1.1,d.185.1.1 104252,104253 1pfc 113 1.23e+01 1cqkA b.1.1.2 21546 1qcrA 446 1.23e+01 1be3A d.185.1.1,d.185.1.1 59025,59026 1zdzA 302 1.41e+01 1wdnA 226 1.47e+01 1lst c.94.1.1 35816 1n8fA 350 1.73e+01 c.1.10.4 85397 1gg1A 350 1.80e+01 1qr7A c.1.10.4 29187 1gkzA 388 1.89e+01 a.29.5.1,d.122.1.4 65268,65269 2fug2 181 1.94e+01 1x87A 551 2.01e+01 1igtB 444 2.07e+01 1igtB b.1.1.1,b.1.1.2,b.1.1.2,b.1.1.2 19765,20867,20868,20869 1q8iA 783 2.71e+01 c.55.3.5,e.8.1.1 96208,96209 1r5mA 425 2.84e+01 1j1lA 290 3.10e+01 b.82.1.12 90766 1w18A 493 3.11e+01 1r8gA 372 3.39e+01 d.128.1.3 104845 1gh6A 114 3.49e+01 a.2.3.1 65191 1i16 130 3.61e+01 1i16 b.36.1.2 24787 1dtzA 689 3.65e+01 1cb6A c.94.1.2,c.94.1.2 59134,59135 1dgjA 907 3.67e+01 1alo a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 17909,37694,38585,41415 1igyB 434 3.71e+01 1igtB b.1.1.1,b.1.1.2,b.1.1.2,b.1.1.2 19769,20875,20876,20877 1e14M 307 3.97e+01 6prcM f.26.1.1 43498 1yf6M 307 4.34e+01 1cmxA 236 4.42e+01 1uch d.3.1.6 37130 1c4kA 730 4.58e+01 1ordA c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1cqkA 101 4.86e+01 1cqkA b.1.1.2 21547 1ud1A 476 4.91e+01 b.82.1.2,b.82.1.2 99202,99203 1ordA 730 5.00e+01 1ordA c.23.1.4,c.67.1.5,d.125.1.1 31274,34503,41124 1m0wA 491 5.04e+01 c.30.1.4,d.142.1.6 78363,78364 2bwwA 440 5.04e+01 1g8jA 825 5.07e+01 1g8jA b.52.2.2,c.81.1.1 26924,35332 1g8kA 825 5.23e+01 1g8jA b.52.2.2,c.81.1.1 26920,35328 1i1aC 225 5.53e+01 1igtB b.1.1.2,b.1.1.2 21540,21541 2bwvA 440 5.55e+01 1ujpA 271 5.56e+01 c.1.2.4 99462 1iisA 224 5.59e+01 1igtB b.1.1.2,b.1.1.2 62454,62455 2aioA 269 5.66e+01 1od2A 805 5.75e+01 c.14.1.4,c.14.1.4 86821,86822 1ezvD 245 5.90e+01 1be3D a.3.1.3,f.23.11.1 59546,59547 1kb9D 246 5.92e+01 a.3.1.3,f.23.11.1 77317,77318 1kyoD 248 5.95e+01 a.3.1.3,f.23.11.1 73254,73255 1fnsL 214 6.08e+01 32c2A b.1.1.1,b.1.1.2 20288,21280 1kv3A 687 6.10e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 73027,73028,73029,73030 1oakL 212 6.18e+01 8fabA b.1.1.1,b.1.1.2 20290,21282 1w63M 423 6.23e+01 i.23.1.1 109204 1i1cA 239 6.25e+01 1igtB b.1.1.2,b.1.1.2 21536,21537 1v9cA 218 6.41e+01 c.23.17.1 100533 1uyrA 737 6.47e+01 c.14.1.4,c.14.1.4 100188,100189 1vggA 161 6.53e+01 1mcoH 428 6.54e+01 1igtB b.1.1.1,b.1.1.2,b.1.1.2,b.1.1.2 20564,21469,21470,21471 1mpsM 307 6.57e+01 6prcM f.26.1.1 43468 1fc2D 224 6.60e+01 1igtB b.1.1.2,b.1.1.2 21516,21517 1uyvA 737 6.61e+01 c.14.1.4,c.14.1.4 100204,100205 1e4kA 225 6.65e+01 1igtB b.1.1.2,b.1.1.2 21526,21527 2bwsA 440 6.73e+01 1iixA 224 6.75e+01 1igtB b.1.1.2,b.1.1.2 62462,62463 1adqA 206 6.75e+01 1igtB b.1.1.2,b.1.1.2 21518,21519 1w2xA 758 6.77e+01 c.14.1.4,c.14.1.4 109134,109135 1z9jB 307 6.82e+01 1wl9A 440 6.83e+01 1h3uA 223 6.88e+01 b.1.1.2,b.1.1.2 76657,76658 1t83A 224 7.19e+01 b.1.1.2,b.1.1.2 106643,106644 2gj7A 227 7.38e+01 1r89A 437 7.41e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 2fvkA 559 7.52e+01 1jb0A 755 7.62e+01 1jb0A f.29.1.1 62820 1tqyB 415 7.74e+01 c.95.1.1,c.95.1.1 107247,107248 1m9sA 605 7.86e+01 b.1.18.15,b.34.11.1,b.34.11.1,b.34.11.1,c.10.2.1 78874,78875,78876,78877,78878 1g0u1 266 7.99e+01 1dn2A 207 8.09e+01 1igtB b.1.1.2,b.1.1.2 21512,21513 2bwyA 440 8.35e+01 1yfsA 465 8.39e+01 1vlbA 907 8.41e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1fgqA 839 8.48e+01 1yge a.119.1.1,b.12.1.1 59826,59827 1o5kA 306 8.50e+01 c.1.10.1 92504 1zkdA 387 8.57e+01 1wyuA 438 8.60e+01 1kbyM 307 8.64e+01 f.26.1.1 77330 1hh4D 204 8.75e+01 b.1.18.8 61039 1wcdJ 441 8.77e+01 1nt4A 391 8.89e+01 c.60.1.2 92102 2ga9D 469 8.90e+01 2cg4A 152 8.91e+01 1z2zA 446 8.94e+01 2bk0A 154 9.00e+01