# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gvkA 317 1.32e-38 2cb2A 318 5.16e-01 3gcb 470 1.02e+00 3gcb d.3.1.1 37032 1q2lA 939 1.27e+00 1iq4A 179 1.42e+00 1iq4A d.77.1.1 62641 1r89A 437 1.60e+00 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1r8gA 372 1.95e+00 d.128.1.3 104845 1wu7A 434 2.60e+00 1zvdA 380 2.84e+00 1o08A 221 2.89e+00 c.108.1.6 86525 1omzA 293 3.94e+00 c.68.1.15 87093 1t0tV 248 4.93e+00 d.58.4.10 106229 1j58A 385 5.43e+00 b.82.1.2 71531 1o97D 320 5.43e+00 c.26.2.3,c.31.1.2 81233,81234 1e8yA 966 5.70e+00 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1o12A 376 6.78e+00 b.92.1.5,c.1.9.10 80758,80759 1aqcA 172 6.78e+00 1x11A b.55.1.2 26983 1fj2A 232 6.88e+00 1auoA c.69.1.14 34720 1uxy 340 6.94e+00 2mbr d.145.1.2,d.146.1.1 41748,41761 1jg1A 235 7.04e+00 c.66.1.7 66661 2bklA 695 7.33e+00 1rlhA 173 7.54e+00 d.256.1.1 97646 1wu4A 396 9.31e+00 1t4hA 290 9.95e+00 d.144.1.7 106420 2ckiA 262 1.04e+01 1izoA 417 1.05e+01 a.104.1.1 83851 1e7uA 961 1.06e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 2fnjB 118 1.15e+01 1kv7A 488 1.19e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 2govA 195 1.21e+01 1wosA 364 1.27e+01 b.44.2.1,d.250.1.1 109468,109469 1w5fA 353 1.40e+01 1eu8A 409 1.41e+01 1eu8A c.94.1.1 59502 1j27A 102 1.44e+01 d.58.50.1 90778 1opc 110 1.52e+01 1opc a.4.6.1 16231 1zdzA 302 1.53e+01 2ahuA 531 1.53e+01 2d1pB 119 1.57e+01 2gn4A 344 1.62e+01 1fm0E 150 1.63e+01 1fmaE d.41.5.1 38629 1vf8A 377 1.68e+01 1ugpA 203 1.77e+01 d.149.1.1 107831 1e2kA 331 1.82e+01 1qhiA c.37.1.1 31854 1lm8B 118 1.90e+01 d.15.1.1 74033 1rwzA 245 1.92e+01 d.131.1.2,d.131.1.2 98005,98006 2bcgG 453 1.97e+01 1fmjA 351 1.99e+01 c.37.1.5 59879 2c2aA 258 2.02e+01 1yb2A 275 2.14e+01 1wruA 379 2.26e+01 1vj7A 393 2.31e+01 a.211.1.1,d.218.1.8 100801,100802 1nbwA 607 2.43e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1jpzA 473 2.58e+01 a.104.1.1 67069 8dfr 189 2.60e+01 1aoeA c.71.1.1 34895 2d0oA 610 2.68e+01 1euhA 475 2.75e+01 1euhA c.82.1.1 35369 1c0pA 363 2.76e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1sq5A 308 2.81e+01 c.37.1.6 105882 1jb0A 755 2.81e+01 1jb0A f.29.1.1 62820 1dysA 348 2.81e+01 1bvwA c.6.1.1 30669 2gnpA 266 2.84e+01 1us5A 314 3.07e+01 c.94.1.1 99856 1isiA 265 3.14e+01 e.4.1.1 71394 1vdwA 254 3.23e+01 e.7.1.1 100569 1uxtA 501 3.33e+01 c.82.1.1 108125 1vrmA 325 3.33e+01 1l1sA 113 3.34e+01 c.114.1.1 73484 1gskA 513 3.44e+01 b.6.1.3,b.6.1.3,b.6.1.3 83314,83315,83316 1kaeA 434 3.45e+01 c.82.1.2 72247 1zhxA 438 3.46e+01 1px5A 349 3.47e+01 a.160.1.2,d.218.1.6 95277,95278 1yueA 427 3.47e+01 1sqiA 393 3.47e+01 d.32.1.3,d.32.1.3 105914,105915 1qd1A 325 3.49e+01 1qd1A d.58.34.1,d.58.34.1 39493,39494 1lcyA 325 3.53e+01 b.36.1.4,b.47.1.1 73834,73835 1kmvA 186 3.57e+01 c.71.1.1 72757 1jyhA 157 3.74e+01 d.60.1.3 71956 1ofdA 1520 3.83e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1rf8B 100 3.91e+01 a.210.1.1 97371 1wxxA 382 3.96e+01 1ys4A 354 4.04e+01 1xrjA 261 4.12e+01 1auoA 218 4.14e+01 1auoA c.69.1.14 34716 1nriA 306 4.14e+01 c.80.1.3 86123 1wvqA 167 4.14e+01 1p35A 299 4.23e+01 1p35A b.28.1.1 23925 2cxnA 557 4.31e+01 1moq 368 4.35e+01 1moq c.80.1.1 35302 1ki1B 352 4.49e+01 a.87.1.1,b.55.1.1 72497,72498 1ycdA 243 4.54e+01 2dg5A 366 4.71e+01 1vggA 161 4.84e+01 1vimA 200 4.84e+01 c.80.1.3 100758 1aihA 170 4.87e+01 1aihA d.163.1.1 42149 1hy7A 173 4.90e+01 d.92.1.11 65957 1d2mA 665 4.96e+01 1d2mA c.37.1.19,c.37.1.19 32417,32418 1z3eA 132 4.98e+01 1lopA 164 5.07e+01 2cpl b.62.1.1 27510 2gfhA 260 5.14e+01 1pv5A 264 5.16e+01 d.251.1.1 95150 1qstA 160 5.28e+01 1yghA d.108.1.1 40804 1o7qA 289 5.31e+01 c.68.1.9 92626 1q8iA 783 5.32e+01 c.55.3.5,e.8.1.1 96208,96209 1ixh 321 5.33e+01 1ixh c.94.1.1 35761 1vkwA 218 5.35e+01 d.90.1.2 108695 1j3aA 142 5.38e+01 c.21.1.1 77070 1f3lA 321 5.44e+01 1g6q2 c.66.1.6 59630 1wz8A 264 5.46e+01 1m0wA 491 5.52e+01 c.30.1.4,d.142.1.6 78363,78364 1grj 158 5.66e+01 1grj a.2.1.1,d.26.1.2 15691,38433 1dciA 275 5.75e+01 1dciA c.14.1.3 30918 1fgkA 310 5.80e+01 1fgkA d.144.1.7 41693 1twuA 139 5.81e+01 d.32.1.8 107413 1m3sA 186 5.87e+01 c.80.1.3 78573 1vlbA 907 5.87e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1yw0A 276 5.89e+01 1n83A 270 5.90e+01 a.123.1.1 80276 1w9yA 319 5.96e+01 2gfsA 372 5.96e+01 1svdA 473 5.99e+01 1fjgI 128 6.06e+01 1fjfI d.14.1.1 37559 1cnzA 363 6.06e+01 1cnzA c.77.1.1 35061 1pch 88 6.13e+01 1ptf d.94.1.1 40564 2fkkA 206 6.20e+01 1p7tA 731 6.23e+01 c.1.13.1 94319 1sx5A 244 6.26e+01 c.52.1.2 99023 1x72A 334 6.27e+01 d.126.1.6 109495 2cg4A 152 6.43e+01 2blnA 305 6.82e+01 1g03A 134 6.85e+01 1qrjB a.73.1.1 60162 2b8eA 273 6.93e+01 1ohtA 215 6.96e+01 d.118.1.1 87036 1sfe 180 6.99e+01 1sfe a.4.2.1,c.55.7.1 16073,33748 1z8gA 372 7.00e+01 1chmA 401 7.00e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 1e8cA 498 7.12e+01 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1hbnC 248 7.20e+01 1mroC d.58.31.1 60902 1c4oA 664 7.26e+01 1d2mA c.37.1.19,c.37.1.19 32415,32416 1heiA 451 7.26e+01 1heiA c.37.1.14,c.37.1.14 32463,32464 1a6jA 163 7.34e+01 1a6jA d.112.1.1 40915 1id1A 153 7.35e+01 1id1A c.2.1.9 62286 1ofuX 119 7.39e+01 c.37.1.22 86976 2aalA 131 7.43e+01 2cmuA 342 7.43e+01 1xkrA 206 7.47e+01 1t1dA 100 7.51e+01 1t1dA d.42.1.2 38637 1ppjA 446 7.72e+01 d.185.1.1,d.185.1.1 104252,104253 1zjcA 418 7.80e+01 1z08A 170 7.80e+01 2cxaA 256 7.81e+01 1f1uA 323 7.82e+01 d.32.1.3,d.32.1.3 83200,83201 2jdxA 385 7.86e+01 1jdw d.126.1.2 41139 1efdN 266 7.92e+01 1efdN c.92.2.1 35597 1v5vA 401 8.12e+01 1uj2A 252 8.12e+01 c.37.1.6 99452 1tc1A 220 8.14e+01 1tc1A c.61.1.1 34083 1rm8A 169 8.23e+01 d.92.1.11 97660 1hc7A 477 8.31e+01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1rq2A 382 8.35e+01 c.32.1.1,d.79.2.1 105048,105049 1ow1A 195 8.54e+01 b.131.1.3 93625 1z5rA 306 8.56e+01 1mp8A 281 8.66e+01 d.144.1.7 91384 1ftrA 296 8.70e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 1wi1A 126 8.80e+01 1ei5A 520 8.89e+01 1ei5A b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772