# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gvkA 317 5.21e-44 1uc2A 481 7.60e-01 d.261.1.1 99161 1p7tA 731 2.20e+00 c.1.13.1 94319 2bkrA 212 2.61e+00 1e8cA 498 2.75e+00 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1zdzA 302 3.58e+00 2g0dA 409 4.38e+00 2f5gA 133 4.41e+00 1o08A 221 5.72e+00 c.108.1.6 86525 1r8gA 372 6.23e+00 d.128.1.3 104845 1j1lA 290 6.81e+00 b.82.1.12 90766 1l1sA 113 6.83e+00 c.114.1.1 73484 1wdnA 226 8.17e+00 1lst c.94.1.1 35816 1nfp 228 8.22e+00 1nfp c.1.16.2 29555 1v4pA 157 8.36e+00 1u8xX 472 9.08e+00 c.2.1.5,d.162.1.2 107741,107742 2d0tA 406 9.38e+00 1vlbA 907 9.56e+00 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1o12A 376 9.89e+00 b.92.1.5,c.1.9.10 80758,80759 1gsa 316 1.05e+01 1gsa c.30.1.3,d.142.1.1 31718,41477 2aioA 269 1.18e+01 1s1fA 406 1.19e+01 1d4aA 273 1.31e+01 1d4aA c.23.5.3 31219 1kmvA 186 1.32e+01 c.71.1.1 72757 1uedA 406 1.36e+01 a.104.1.1 99256 1u5vA 273 1.38e+01 1c0pA 363 1.42e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1tqyB 415 1.54e+01 c.95.1.1,c.95.1.1 107247,107248 1n8fA 350 1.56e+01 c.1.10.4 85397 2c12A 439 1.58e+01 1u5hA 273 1.63e+01 1yw0A 276 1.70e+01 1q8iA 783 1.75e+01 c.55.3.5,e.8.1.1 96208,96209 1l6xA 207 1.79e+01 b.1.1.2,b.1.1.2 73642,73643 1fo8A 343 1.82e+01 1foaA c.68.1.10 59927 1omzA 293 1.85e+01 c.68.1.15 87093 1xioA 261 1.87e+01 2czdA 208 2.01e+01 1ag9A 175 2.06e+01 1rcf c.23.5.1 31178 2bkkA 264 2.08e+01 2fyxA 143 2.10e+01 1budA 197 2.12e+01 1atlA d.92.1.9 40328 1vmaA 306 2.14e+01 a.24.13.1,c.37.1.10 108887,108888 1cruA 454 2.29e+01 1c9uA b.68.2.1 27617 1wzzA 334 2.30e+01 1zbsA 291 2.31e+01 2bjqA 345 2.42e+01 1vgjA 184 2.42e+01 2f1rA 171 2.44e+01 1chmA 401 2.52e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 2cvdA 198 2.58e+01 1ia6A 441 2.73e+01 a.102.1.2 76738 1s4bP 674 2.80e+01 d.92.1.5 105252 2g5dA 422 2.80e+01 1sgvA 316 2.92e+01 b.122.1.1,d.265.1.2 98858,98859 1wn5A 130 2.92e+01 1fm0E 150 2.92e+01 1fmaE d.41.5.1 38629 1w9yA 319 2.92e+01 1r89A 437 3.03e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1tt8A 164 3.05e+01 1m0kA 262 3.12e+01 f.13.1.1 78344 2cg4A 152 3.14e+01 1xkrA 206 3.15e+01 1wyuA 438 3.23e+01 1v4xA 144 3.23e+01 a.1.1.2 108363 1yovA 537 3.26e+01 1hssA 124 3.26e+01 1bea a.52.1.2 17819 1ub3A 220 3.29e+01 c.1.10.1 88395 1uyrA 737 3.29e+01 c.14.1.4,c.14.1.4 100188,100189 1ntyA 311 3.38e+01 a.87.1.1,b.55.1.1 103873,103874 1sbp 310 3.42e+01 1sbp c.94.1.1 35760 1adt 356 3.52e+01 1anv a.54.1.1,g.51.1.1,g.51.1.1 17887,45362,45368 1i0lA 221 3.61e+01 c.61.1.1 71096 1pii 452 3.65e+01 1pii c.1.2.4,c.1.2.4 28559,28563 1ppjA 446 3.68e+01 d.185.1.1,d.185.1.1 104252,104253 1m0wA 491 3.71e+01 c.30.1.4,d.142.1.6 78363,78364 2f6kA 307 3.71e+01 1f4pA 147 3.74e+01 5nul c.23.5.1 59651 1yarO 237 3.74e+01 1d4xG 126 3.74e+01 1d0nA d.109.1.1 59109 1x1zA 252 3.75e+01 1tc1A 220 3.84e+01 1tc1A c.61.1.1 34083 1wkcA 184 3.96e+01 2gmyA 153 3.98e+01 1kb9D 246 4.05e+01 a.3.1.3,f.23.11.1 77317,77318 1wz8A 264 4.13e+01 1bvyF 191 4.22e+01 1bvyF c.23.5.1 31207 1vlpA 441 4.23e+01 d.41.2.2,d.41.2.3 108840,108841 1yyaA 250 4.23e+01 1wmuA 141 4.23e+01 a.1.1.2 109416 1wxxA 382 4.30e+01 1iujA 106 4.40e+01 d.58.4.5 90701 1hdiA 413 4.51e+01 16pk c.86.1.1 60964 1vrmA 325 4.53e+01 1iyhA 198 4.66e+01 a.45.1.1,c.47.1.5 83790,83791 1fmjA 351 4.78e+01 c.37.1.5 59879 1tl9A 339 4.79e+01 1aoeA 192 4.85e+01 1aoeA c.71.1.1 34923 2d1eA 248 4.88e+01 1lshA 1056 4.89e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1jkoC 52 4.98e+01 a.4.1.2 66809 1y0hA 105 4.98e+01 1rhcA 330 5.11e+01 c.1.16.3 97468 1p35A 299 5.17e+01 1p35A b.28.1.1 23925 1vkmA 297 5.21e+01 c.138.1.1 108670 1qwgA 251 5.22e+01 c.1.27.1 96473 1avwB 171 5.32e+01 1wba b.42.4.1 25599 2bkyX 89 5.42e+01 1ea7A 310 5.45e+01 c.41.1.1 70086 1i3cA 149 5.53e+01 c.23.1.1 71112 1km4A 247 5.53e+01 c.1.2.3 72740 1ovlA 271 5.65e+01 a.123.1.1 87455 1fp1D 372 5.66e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 1ql3A 99 5.73e+01 1ycc a.3.1.1 15822 2sli 679 5.97e+01 2sli b.29.1.9,b.68.1.1 24274,27611 1me4A 215 6.10e+01 d.3.1.1 79023 2a1vA 144 6.11e+01 2b4vA 468 6.24e+01 1m12A 84 6.24e+01 a.64.1.1 84745 1epuA 591 6.25e+01 1dn1A e.25.1.1 43358 1it2A 146 6.31e+01 a.1.1.2 66365 1ys4A 354 6.31e+01 1bf5A 545 6.32e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1t0tV 248 6.35e+01 d.58.4.10 106229 1ejxC 567 6.37e+01 b.92.1.1,c.1.9.2 83184,83185 1wgzA 510 6.39e+01 2aq8A 269 6.43e+01 1z6fA 363 6.45e+01 1v72A 356 6.51e+01 1ituA 369 6.69e+01 c.1.9.7 71423 1u04A 771 6.78e+01 b.34.14.1,c.55.3.10 107539,107540 1eny 268 6.80e+01 1eny c.2.1.2 29910 1mp9A 198 6.82e+01 d.129.1.1,d.129.1.1 91385,91386 1jkeA 145 6.85e+01 c.110.1.1 66791 1np7A 489 6.86e+01 a.99.1.1,c.28.1.1 80677,80678 1t0aA 159 7.15e+01 1qwrA 319 7.17e+01 b.82.1.3 96491 1nf2A 268 7.28e+01 c.108.1.10 91849 1kf6C 130 7.32e+01 f.21.2.2 72399 2g50A 530 7.39e+01 1t0qA 498 7.60e+01 a.25.1.2 106220 1moq 368 7.66e+01 1moq c.80.1.1 35302 1u2pA 163 7.82e+01 1gbg 214 7.88e+01 1axkA b.29.1.2 24171 1w2xA 758 8.07e+01 c.14.1.4,c.14.1.4 109134,109135 2gsq 202 8.17e+01 1pd21 a.45.1.1,c.47.1.5 17715,33009 1ra6A 461 8.21e+01 e.8.1.4 104879 1kjnA 157 8.26e+01 c.115.1.1 72614 1idk 359 8.31e+01 1qcxA b.80.1.2 28025 2fkkA 206 8.39e+01 1opc 110 8.46e+01 1opc a.4.6.1 16231 2pgd 482 8.46e+01 2pgd a.100.1.1,c.2.1.6 18778,30190 1ks8A 433 8.46e+01 a.102.1.2 77519 2ch4A 320 8.50e+01 2bsyA 278 8.59e+01 1wloA 136 8.85e+01 3gcb 470 8.88e+01 3gcb d.3.1.1 37032 1njrA 284 8.88e+01 c.50.1.2 103858 2ddfA 257 8.89e+01 1oz2A 331 8.97e+01 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783