# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gvkA 317 3.33e-36 2cb2A 318 4.78e-01 1zdzA 302 5.96e-01 1t0tV 248 7.17e-01 d.58.4.10 106229 1nbwA 607 7.53e-01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1zvdA 380 8.56e-01 1wu7A 434 9.36e-01 1iq4A 179 1.11e+00 1iq4A d.77.1.1 62641 1r8gA 372 1.44e+00 d.128.1.3 104845 3gcb 470 1.56e+00 3gcb d.3.1.1 37032 1rlhA 173 1.66e+00 d.256.1.1 97646 1vlbA 907 1.90e+00 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1fmjA 351 2.96e+00 c.37.1.5 59879 1sq5A 308 3.27e+00 c.37.1.6 105882 1fj2A 232 3.60e+00 1auoA c.69.1.14 34720 1qd1A 325 3.86e+00 1qd1A d.58.34.1,d.58.34.1 39493,39494 1e2kA 331 3.89e+00 1qhiA c.37.1.1 31854 1zjcA 418 3.96e+00 1cnzA 363 3.98e+00 1cnzA c.77.1.1 35061 1omzA 293 4.13e+00 c.68.1.15 87093 1lqtA 456 4.19e+00 c.3.1.1,c.4.1.1 74198,74199 2gn4A 344 4.75e+00 1ys4A 354 5.15e+00 1nriA 306 5.38e+00 c.80.1.3 86123 1xrjA 261 5.57e+00 1vj7A 393 5.94e+00 a.211.1.1,d.218.1.8 100801,100802 1fm0E 150 6.52e+00 1fmaE d.41.5.1 38629 2govA 195 6.61e+00 2jdxA 385 6.75e+00 1jdw d.126.1.2 41139 1vggA 161 7.17e+00 2cg4A 152 7.21e+00 2c2aA 258 7.87e+00 1e8cA 498 8.12e+00 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1lm8B 118 8.84e+00 d.15.1.1 74033 2fnjB 118 8.95e+00 2bklA 695 9.05e+00 1w5fA 353 9.27e+00 1wvqA 167 9.38e+00 1o08A 221 9.45e+00 c.108.1.6 86525 1m3sA 186 9.48e+00 c.80.1.3 78573 1uj2A 252 9.93e+00 c.37.1.6 99452 1moq 368 1.00e+01 1moq c.80.1.1 35302 1n8fA 350 1.04e+01 c.1.10.4 85397 1t4hA 290 1.07e+01 d.144.1.7 106420 2chnA 716 1.10e+01 1j5uA 136 1.15e+01 d.208.1.1 71584 1chmA 401 1.17e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 1f45B 197 1.22e+01 1f45B a.26.1.1 59642 1nnwA 252 1.26e+01 d.159.1.5 80674 1vkwA 218 1.28e+01 d.90.1.2 108695 1yb2A 275 1.29e+01 1ftrA 296 1.32e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 1kv7A 488 1.33e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1uxy 340 1.34e+01 2mbr d.145.1.2,d.146.1.1 41748,41761 1wruA 379 1.34e+01 1tz0A 114 1.35e+01 d.58.4.5 107463 1vimA 200 1.36e+01 c.80.1.3 100758 1vdwA 254 1.38e+01 e.7.1.1 100569 1wosA 364 1.41e+01 b.44.2.1,d.250.1.1 109468,109469 1euhA 475 1.41e+01 1euhA c.82.1.1 35369 1xkpC 143 1.44e+01 1o7qA 289 1.47e+01 c.68.1.9 92626 2dri 271 1.48e+01 2dri c.93.1.1 35637 1izoA 417 1.49e+01 a.104.1.1 83851 1m0wA 491 1.57e+01 c.30.1.4,d.142.1.6 78363,78364 1l1sA 113 1.57e+01 c.114.1.1 73484 2cxnA 557 1.64e+01 1x7dA 350 1.66e+01 1x72A 334 1.66e+01 d.126.1.6 109495 1ofdA 1520 1.68e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1e8yA 966 1.70e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1j27A 102 1.71e+01 d.58.50.1 90778 1kaeA 434 1.73e+01 c.82.1.2 72247 2gfhA 260 1.74e+01 8dfr 189 1.78e+01 1aoeA c.71.1.1 34895 1jpzA 473 1.83e+01 a.104.1.1 67069 1q2lA 939 1.83e+01 1gskA 513 1.87e+01 b.6.1.3,b.6.1.3,b.6.1.3 83314,83315,83316 1auoA 218 1.92e+01 1auoA c.69.1.14 34716 1kwgA 645 1.92e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 2ckiA 262 1.94e+01 1kmqA 184 2.01e+01 c.37.1.8 84412 1w9yA 319 2.05e+01 1ss9A 311 2.07e+01 c.68.1.4 105978 1rwtA 232 2.13e+01 f.43.1.1 97992 1x42A 232 2.17e+01 1zcjA 463 2.18e+01 1c0pA 363 2.25e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1aqcA 172 2.25e+01 1x11A b.55.1.2 26983 1ga8A 311 2.29e+01 1ga8A c.68.1.4 34516 1ppjA 446 2.39e+01 d.185.1.1,d.185.1.1 104252,104253 1opc 110 2.40e+01 1opc a.4.6.1 16231 1uxtA 501 2.41e+01 c.82.1.1 108125 2bhwA 232 2.49e+01 1ro5A 201 2.52e+01 d.108.1.3 105023 1z3eA 132 2.53e+01 1q0pA 223 2.57e+01 c.62.1.1 95507 1mp9A 198 2.67e+01 d.129.1.1,d.129.1.1 91385,91386 1vddA 228 2.69e+01 e.49.1.1 108519 1v5vA 401 2.73e+01 1vjjA 692 2.78e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 1ni4B 341 2.81e+01 c.36.1.7,c.48.1.2 85729,85730 1ycdA 243 2.82e+01 1kmvA 186 2.83e+01 c.71.1.1 72757 2aalA 131 2.83e+01 1ohtA 215 2.86e+01 d.118.1.1 87036 1hy7A 173 2.88e+01 d.92.1.11 65957 2d0oA 610 2.89e+01 1ow1A 195 2.94e+01 b.131.1.3 93625 2b20A 403 3.00e+01 1e7uA 961 3.02e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1hc7A 477 3.12e+01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 2bgiA 272 3.16e+01 1ezwA 349 3.19e+01 1ezwA c.1.16.3 29558 1lopA 164 3.20e+01 2cpl b.62.1.1 27510 1f60A 458 3.21e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1rq2A 382 3.22e+01 c.32.1.1,d.79.2.1 105048,105049 1epuA 591 3.22e+01 1dn1A e.25.1.1 43358 1rf8B 100 3.31e+01 a.210.1.1 97371 2bcgG 453 3.34e+01 1giqA 413 3.34e+01 d.166.1.1,d.166.1.1 76224,76225 1zhxA 438 3.35e+01 2b9wA 424 3.43e+01 1z08A 170 3.43e+01 1ruwA 69 3.46e+01 1px5A 349 3.47e+01 a.160.1.2,d.218.1.6 95277,95278 1afwA 393 3.47e+01 1afwA c.95.1.1,c.95.1.1 35900,35901 1d2mA 665 3.50e+01 1d2mA c.37.1.19,c.37.1.19 32417,32418 1jdw 423 3.55e+01 1jdw d.126.1.2 41129 1sc6A 404 3.59e+01 1io7A 368 3.66e+01 1f4tA a.104.1.1 18971 1z7lA 276 3.66e+01 1fgkA 310 3.67e+01 1fgkA d.144.1.7 41693 1nw3A 416 3.74e+01 c.66.1.31 86288 1pc6A 146 3.75e+01 d.262.1.1 94430 1c4oA 664 3.92e+01 1d2mA c.37.1.19,c.37.1.19 32415,32416 1sqiA 393 3.94e+01 d.32.1.3,d.32.1.3 105914,105915 2cmuA 342 4.03e+01 1kb9B 352 4.06e+01 d.185.1.1,d.185.1.1 77313,77314 1h1dA 221 4.12e+01 c.66.1.1 83452 1lt8A 406 4.14e+01 c.1.26.1 78186 1wxxA 382 4.20e+01 1g7sA 594 4.37e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 2byoA 207 4.41e+01 1x7yB 342 4.45e+01 1jg1A 235 4.53e+01 c.66.1.7 66661 2dlbA 80 4.57e+01 1y8aA 332 4.61e+01 1wloA 136 4.72e+01 1e1oA 504 4.74e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 1p7tA 731 4.75e+01 c.1.13.1 94319 1efdN 266 4.76e+01 1efdN c.92.2.1 35597 1uf2A 1019 4.78e+01 e.28.1.2 99289 1eluA 390 4.88e+01 1elqA c.67.1.3 34434 1sfe 180 4.89e+01 1sfe a.4.2.1,c.55.7.1 16073,33748 1cs8A 316 4.94e+01 1cs8A d.3.1.1 37065 1wi1A 126 5.06e+01 1j3aA 142 5.09e+01 c.21.1.1 77070 2blkA 122 5.13e+01 2bkyX 89 5.14e+01 1d4aA 273 5.16e+01 1d4aA c.23.5.3 31219 2gnpA 266 5.23e+01 1z6fA 363 5.25e+01 2bvfA 459 5.33e+01 1vrmA 325 5.33e+01 1w70A 60 5.33e+01 1cjwA 166 5.43e+01 1cjwA d.108.1.1 40818 1l1lA 739 5.43e+01 c.7.1.4 73470 1z5rA 306 5.49e+01 1ovlA 271 5.52e+01 a.123.1.1 87455 1h75A 81 5.57e+01 1h75A c.47.1.1 60716 1o97D 320 5.64e+01 c.26.2.3,c.31.1.2 81233,81234 1tr0A 108 5.67e+01 d.58.4.4 107261 1j5xA 342 5.70e+01 c.80.1.1 71591 1o5xA 248 5.90e+01 c.1.1.1 92528 1rwzA 245 5.90e+01 d.131.1.2,d.131.1.2 98005,98006 1e9pA 151 5.93e+01 1mfmA b.1.8.1 22215 1tk9A 188 6.00e+01 c.80.1.3 107082 1jyhA 157 6.01e+01 d.60.1.3 71956 1ea7A 310 6.04e+01 c.41.1.1 70086 2b34A 199 6.05e+01 2ahuA 531 6.16e+01 1wb4A 297 6.21e+01 2ftrA 108 6.21e+01 1fxlA 167 6.22e+01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1g5hA 454 6.23e+01 1g5hA c.51.1.1,d.104.1.1 60270,60271 1n4qB 377 6.29e+01 a.102.4.3 91636 1ki1B 352 6.29e+01 a.87.1.1,b.55.1.1 72497,72498 1p80A 753 6.43e+01 c.23.16.3,e.5.1.1 94337,94338 1budA 197 6.46e+01 1atlA d.92.1.9 40328 1ugpB 226 6.58e+01 b.34.4.4 107832 1rm8A 169 6.63e+01 d.92.1.11 97660 1ofuX 119 6.66e+01 c.37.1.22 86976 1vqoB 338 6.67e+01 2d1eA 248 6.74e+01 1mml 265 6.78e+01 1mml e.8.1.2 43015 1ntyA 311 6.81e+01 a.87.1.1,b.55.1.1 103873,103874 1r89A 437 6.90e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1z0wA 207 7.01e+01 1zjjA 263 7.13e+01 1nbaA 264 7.16e+01 1nbaA c.33.1.3 31753 1r1mA 164 7.22e+01 d.79.7.1 96820 1odfA 290 7.33e+01 c.37.1.6 92782 2a9dA 372 7.33e+01 1din 236 7.49e+01 1din c.69.1.9 34682 1hbnC 248 7.49e+01 1mroC d.58.31.1 60902 1eu8A 409 7.53e+01 1eu8A c.94.1.1 59502 1ql3A 99 7.57e+01 1ycc a.3.1.1 15822 1jkeA 145 7.60e+01 c.110.1.1 66791 1pv5A 264 7.61e+01 d.251.1.1 95150 1d4xG 126 7.71e+01 1d0nA d.109.1.1 59109 1yw0A 276 7.78e+01 1vf8A 377 7.78e+01 1mo1A 87 7.93e+01 d.94.1.1 91363 1v4pA 157 7.94e+01 1aihA 170 7.96e+01 1aihA d.163.1.1 42149 1nnhA 294 8.06e+01 d.104.1.1 92005 2bfdB 345 8.06e+01 1gca 309 8.06e+01 1gca c.93.1.1 35659 1ud9A 245 8.09e+01 d.131.1.2,d.131.1.2 107768,107769 1ev7A 317 8.19e+01 1ev7B c.52.1.9 33315 1tc1A 220 8.20e+01 1tc1A c.61.1.1 34083 1wd6A 123 8.24e+01 1y8qB 640 8.36e+01 1azo 232 8.47e+01 1azo c.52.1.14 33329 2b8eA 273 8.53e+01 1aua 296 8.62e+01 1aua a.5.3.1,c.13.1.1 16290,30882 1jeoA 180 8.65e+01 c.80.1.3 66611 1mp8A 281 8.79e+01 d.144.1.7 91384 1pch 88 8.84e+01 1ptf d.94.1.1 40564 1nf3A 195 8.84e+01 c.37.1.8 85594 1xnaA 183 8.84e+01 1xnaA b.18.1.8 23773 1q8iA 783 8.84e+01 c.55.3.5,e.8.1.1 96208,96209 1xkrA 206 8.88e+01 1id1A 153 8.93e+01 1id1A c.2.1.9 62286 1mqvA 125 8.98e+01 a.24.3.2 79415 1wojA 214 8.98e+01 1m1hA 248 8.98e+01 b.114.1.1,d.58.42.1 78415,78416 1t5oA 351 8.99e+01 c.124.1.5 106459