# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gvkA 317 9.23e-44 1r8gA 372 4.92e-01 d.128.1.3 104845 1n8fA 350 3.39e+00 c.1.10.4 85397 1budA 197 3.80e+00 1atlA d.92.1.9 40328 1uc2A 481 4.94e+00 d.261.1.1 99161 1v4pA 157 5.07e+00 2gmyA 153 6.71e+00 1p7tA 731 9.89e+00 c.1.13.1 94319 1vlpA 441 1.05e+01 d.41.2.2,d.41.2.3 108840,108841 2g0dA 409 1.23e+01 2f8aA 208 1.42e+01 1t5oA 351 1.50e+01 c.124.1.5 106459 1kwgA 645 1.70e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 2d1eA 248 1.82e+01 1wdnA 226 1.83e+01 1lst c.94.1.1 35816 2bkkA 264 1.94e+01 1hznA 31 1.99e+01 j.82.1.1 61454 1hssA 124 2.09e+01 1bea a.52.1.2 17819 1uedA 406 2.41e+01 a.104.1.1 99256 1iujA 106 2.62e+01 d.58.4.5 90701 1ag9A 175 2.71e+01 1rcf c.23.5.1 31178 1t0aA 159 2.73e+01 3ygsP 97 2.76e+01 3ygsP a.77.1.3 18435 1wa3A 205 2.80e+01 1zt2B 212 2.91e+01 2gdnA 267 3.10e+01 1tl9A 339 3.22e+01 2bjqA 345 3.23e+01 1cs6A 382 3.30e+01 1cs6A b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21760,21761,21762,21763 1fp1D 372 3.35e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 2ga9D 469 3.44e+01 1q7sA 117 3.51e+01 c.131.1.1 96055 2cb2A 318 3.54e+01 1n62B 809 3.59e+01 d.41.1.1,d.133.1.1 80092,80093 1azsA 220 3.59e+01 1azsA d.58.29.1 39416 1o75A 415 3.61e+01 b.1.20.1,b.1.20.1,b.120.1.1 81117,81118,81119 1yovA 537 3.67e+01 1owfB 94 3.72e+01 a.55.1.1 87488 1h3fA 432 3.86e+01 c.26.1.1,d.66.1.4 76631,76632 1vlmA 219 4.16e+01 c.66.1.41 108836 1t0tV 248 4.21e+01 d.58.4.10 106229 1ks8A 433 4.22e+01 a.102.1.2 77519 1jkeA 145 4.26e+01 c.110.1.1 66791 2bcgY 206 4.58e+01 1gbg 214 4.72e+01 1axkA b.29.1.2 24171 1kmvA 186 4.80e+01 c.71.1.1 72757 1f4pA 147 4.80e+01 5nul c.23.5.1 59651 1chd 203 4.87e+01 1chd c.40.1.1 32478 1w9cA 321 4.95e+01 2bgiA 272 4.98e+01 1z0jA 170 5.13e+01 2aexA 346 5.26e+01 1ys4A 354 5.31e+01 1bouB 302 5.37e+01 1bouB c.56.6.1 33859 1ewkA 490 5.40e+01 1ewkA c.93.1.1 35712 1qj4A 257 5.40e+01 1qj4A c.69.1.20 34796 1i1rB 181 5.49e+01 1i1rB a.26.1.1 61548 1h1nA 305 5.79e+01 c.1.8.3 70855 1t8hA 277 5.85e+01 d.194.1.2 106664 1aoeA 192 5.95e+01 1aoeA c.71.1.1 34923 1j1lA 290 6.14e+01 b.82.1.12 90766 1wloA 136 6.25e+01 1su8A 636 6.38e+01 e.26.1.2 98999 1nd4A 264 6.40e+01 d.144.1.6 91815 2ar1A 172 6.41e+01 1tygB 87 6.43e+01 d.15.3.2 107455 1dugA 234 6.44e+01 1b8xA a.45.1.1,c.47.1.5 17718,33012 2gefA 217 6.47e+01 1r1a1 287 6.48e+01 1aym1 1l1sA 113 6.61e+01 c.114.1.1 73484 1m7bA 184 6.65e+01 c.37.1.8 74572 1vizA 240 6.66e+01 c.1.4.1 100784 1ub3A 220 6.73e+01 c.1.10.1 88395 1otsA 465 6.84e+01 f.20.1.1 87415 1lgpA 116 6.84e+01 b.26.1.2 73890 1n7vA 555 6.95e+01 b.126.1.1 85377 1iirA 415 6.96e+01 1iirA c.87.1.5 62453 1kyfA 247 6.98e+01 b.1.10.1,d.105.1.1 73220,73221 1rijA 25 6.99e+01 k.32.1.1 104951 1cjxA 357 7.02e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1lfwA 470 7.17e+01 c.56.5.4,d.58.19.1 77942,77943 1yarO 237 7.18e+01 1ugpB 226 7.20e+01 b.34.4.4 107832 1pswA 348 7.23e+01 c.87.1.7 88287 1cruA 454 7.31e+01 1c9uA b.68.2.1 27617 1vecA 206 7.41e+01 c.37.1.19 100575 1suuA 312 7.43e+01 b.68.10.1 99006 1tqyB 415 7.54e+01 c.95.1.1,c.95.1.1 107247,107248 1pjcA 361 7.69e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 1t6fA 37 7.81e+01 h.1.28.1 106565 2b4vA 468 7.91e+01 1hdiA 413 8.07e+01 16pk c.86.1.1 60964 1ytlA 174 8.14e+01 1u5hA 273 8.14e+01 1vliA 385 8.22e+01 b.85.1.1,c.1.10.6 108830,108831 1ql3A 99 8.23e+01 1ycc a.3.1.1 15822 1owfA 99 8.29e+01 a.55.1.1 87487 1s1fA 406 8.32e+01 1qo0D 196 8.32e+01 1qo0D c.23.1.3 31125 2gnoA 305 8.52e+01 2fmlA 273 8.59e+01 1r2qA 170 8.68e+01 c.37.1.8 96874 1fo8A 343 8.76e+01 1foaA c.68.1.10 59927 1ow1A 195 8.85e+01 b.131.1.3 93625 1sgjA 284 8.86e+01 c.1.12.5 105535 1r9wA 145 8.88e+01 d.89.1.2 97264 1qwkA 317 8.90e+01 c.1.7.1 96482 1qdeA 224 8.95e+01 1qvaA c.37.1.19 32410 1l6sA 323 8.97e+01 c.1.10.3 73627