Best Alignments for T0328

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2gvkA/T0328-2gvkA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gvkA/T0328-2gvkA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.1940e-331.95e-134
1t0tV/T0328-1t0tV-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t0tV/T0328-1t0tV-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.8745e-011.04e-23 d.58.4.10
1r8gA/T0328-1r8gA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1r8gA/T0328-1r8gA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.2357e+001.39e-10 d.128.1.3
1aoeA/T0328-1aoeA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1aoeA/T0328-1aoeA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.8218e+001.00e-12 1aoeA c.71.1.1
2cb2A/T0328-2cb2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2cb2A/T0328-2cb2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.8698e+007.66e-10
1zvdA/T0328-1zvdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zvdA/T0328-1zvdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.0364e+004.83e-10
1a8y/T0328-1a8y-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1a8y/T0328-1a8y-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.0592e+001.87e-17 1a8y c.47.1.3
c.47.1.3
c.47.1.3
1o08A/T0328-1o08A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1o08A/T0328-1o08A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3401e+013.44e-10 c.108.1.6
1uc2A/T0328-1uc2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1uc2A/T0328-1uc2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4890e+011.31e-12 d.261.1.1
1nbwA/T0328-1nbwA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1nbwA/T0328-1nbwA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5669e+011.24e-09 c.8.6.1
c.55.1.6
c.55.1.6

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001