# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gvkA 317 6.42e-39 1yovA 537 2.33e+00 1p7tA 731 2.55e+00 c.1.13.1 94319 1uc2A 481 2.93e+00 d.261.1.1 99161 1zdzA 302 3.17e+00 1e8cA 498 5.18e+00 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1o08A 221 6.62e+00 c.108.1.6 86525 1d8cA 723 6.82e+00 1d8cA c.1.13.1 29325 2bkrA 212 7.00e+00 1u04A 771 7.74e+00 b.34.14.1,c.55.3.10 107539,107540 1r8gA 372 8.69e+00 d.128.1.3 104845 1dik 874 9.52e+00 1dik c.1.12.2,c.8.1.1,d.142.1.5 29304,30702,41572 1vlbA 907 1.19e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1hlrA 907 1.21e+01 1gkzA 388 1.23e+01 a.29.5.1,d.122.1.4 65268,65269 1aoeA 192 1.26e+01 1aoeA c.71.1.1 34923 1xt9A 212 1.27e+01 1edzA 320 1.36e+01 1ee9A c.2.1.7,c.58.1.2 30287,33935 1o12A 376 1.40e+01 b.92.1.5,c.1.9.10 80758,80759 1z6kA 293 1.43e+01 1s1fA 406 1.69e+01 1l1sA 113 1.70e+01 c.114.1.1 73484 1vgoA 253 1.71e+01 1t0tV 248 1.85e+01 d.58.4.10 106229 2c7hA 86 1.85e+01 1gggA 226 1.94e+01 1lst c.94.1.1 35817 1c0pA 363 1.97e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 2aioA 269 1.97e+01 1u5vA 273 1.98e+01 1kblA 873 2.04e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1u8xX 472 2.05e+01 c.2.1.5,d.162.1.2 107741,107742 2g0dA 409 2.13e+01 1ub3A 220 2.20e+01 c.1.10.1 88395 1ve9A 347 2.21e+01 c.4.1.2,d.16.1.3 100571,100572 2d0tA 406 2.22e+01 1wzzA 334 2.25e+01 1ru3A 732 2.26e+01 e.26.1.3 97835 1fmjA 351 2.34e+01 c.37.1.5 59879 1d4aA 273 2.34e+01 1d4aA c.23.5.3 31219 1u5hA 273 2.37e+01 1chmA 401 2.41e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 2bkqA 212 2.65e+01 1wxxA 382 2.68e+01 1v4pA 157 2.72e+01 2ch4A 320 2.78e+01 2f6kA 307 2.92e+01 1smlA 269 2.95e+01 1smlA d.157.1.1 42053 1qbgA 272 2.97e+01 1d4aA c.23.5.3 31227 1a4sA 503 3.19e+01 1bpwA c.82.1.1 35361 1it2A 146 3.28e+01 a.1.1.2 66365 1xkrA 206 3.31e+01 1eguA 731 3.34e+01 1eguA a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1yw0A 276 3.38e+01 1fo8A 343 3.42e+01 1foaA c.68.1.10 59927 1n7oA 721 3.42e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1v4xA 144 3.77e+01 a.1.1.2 108363 1zejA 293 3.78e+01 2bjqA 345 3.93e+01 1dpgA 485 3.96e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 1sgvA 316 3.97e+01 b.122.1.1,d.265.1.2 98858,98859 1cqkA 101 4.09e+01 1cqkA b.1.1.2 21547 1wyuA 438 4.26e+01 1omzA 293 4.27e+01 c.68.1.15 87093 1ql3A 99 4.33e+01 1ycc a.3.1.1 15822 1czaN 917 4.41e+01 1qhaA c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1wdnA 226 4.51e+01 1lst c.94.1.1 35816 1vmaA 306 4.53e+01 a.24.13.1,c.37.1.10 108887,108888 1l6xA 207 4.56e+01 b.1.1.2,b.1.1.2 73642,73643 2f1rA 171 4.77e+01 1i1rB 181 4.82e+01 1i1rB a.26.1.1 61548 1uedA 406 4.84e+01 a.104.1.1 99256 2d0eA 407 5.07e+01 1rss 151 5.16e+01 1rss a.75.1.1 18392 1e79G 272 5.20e+01 1e79G c.49.2.1 33158 1bbpA 173 5.30e+01 1bbpA b.60.1.1 27147 1souA 194 5.32e+01 c.124.1.6 105858 1yghA 164 5.35e+01 1yghA d.108.1.1 40802 1ntyA 311 5.42e+01 a.87.1.1,b.55.1.1 103873,103874 1r9jA 673 5.43e+01 2ahrA 259 5.57e+01 1d4xG 126 5.58e+01 1d0nA d.109.1.1 59109 1z5zA 271 5.71e+01 2gwhA 298 5.73e+01 1i0lA 221 5.78e+01 c.61.1.1 71096 1r3eA 309 5.86e+01 b.122.1.1,d.265.1.2 96907,96908 1jkoC 52 5.87e+01 a.4.1.2 66809 1fc1A 224 5.92e+01 1igtB b.1.1.2,b.1.1.2 21520,21521 1vdwA 254 6.06e+01 e.7.1.1 100569 1vdxA 184 6.14e+01 1grj 158 6.16e+01 1grj a.2.1.1,d.26.1.2 15691,38433 1fw9A 164 6.35e+01 1fw9A d.190.1.1 60059 1vgjA 184 6.57e+01 2g50A 530 6.64e+01 1nfp 228 6.72e+01 1nfp c.1.16.2 29555 1fo3A 460 6.79e+01 1dl2A a.102.2.1 18845 1cjxA 357 6.80e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1fm0E 150 6.92e+01 1fmaE d.41.5.1 38629 1u55A 188 7.02e+01 d.278.1.1 107677 1v7oA 165 7.07e+01 d.67.1.2 100480 2b34A 199 7.09e+01 1tt8A 164 7.14e+01 1nm1G 125 7.21e+01 d.109.1.1 80653 1iujA 106 7.25e+01 d.58.4.5 90701 1tc1A 220 7.29e+01 1tc1A c.61.1.1 34083 2g5dA 422 7.32e+01 2b1eA 564 7.53e+01 2akrA 285 7.57e+01 2d1eA 248 7.76e+01 2cx1A 187 7.82e+01 2gmyA 153 7.97e+01 1x1nA 524 8.01e+01 1sqgA 429 8.02e+01 a.79.1.3,c.66.1.38 105912,105913 1sbp 310 8.05e+01 1sbp c.94.1.1 35760 1an9A 340 8.09e+01 1an9A c.4.1.2,d.16.1.3 30617,37904 1gpc 218 8.19e+01 1gpc b.40.4.7 25393 1vlpA 441 8.22e+01 d.41.2.2,d.41.2.3 108840,108841 2d0iA 333 8.24e+01 2fug7 129 8.25e+01 2bkkA 264 8.26e+01 1aa8A 347 8.30e+01 1an9A 1zbsA 291 8.45e+01 1ia6A 441 8.46e+01 a.102.1.2 76738 2ga9D 469 8.52e+01 1ax8 146 8.79e+01 1ax8 a.26.1.1 16844 2b25A 336 8.80e+01