# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gvkA 317 1.43e-35 1zvdA 380 3.27e-01 1zdzA 302 5.43e-01 2cb2A 318 1.11e+00 1hlrA 907 1.53e+00 1vlbA 907 1.54e+00 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 3gcb 470 1.60e+00 3gcb d.3.1.1 37032 1rlhA 173 1.73e+00 d.256.1.1 97646 1t0tV 248 1.79e+00 d.58.4.10 106229 1zjcA 418 1.96e+00 1r8gA 372 2.12e+00 d.128.1.3 104845 1gcb 454 2.65e+00 3gcb d.3.1.1 37034 1iq4A 179 3.08e+00 1iq4A d.77.1.1 62641 1fmjA 351 3.68e+00 c.37.1.5 59879 1sq5A 308 4.53e+00 c.37.1.6 105882 1qd1A 325 4.55e+00 1qd1A d.58.34.1,d.58.34.1 39493,39494 1nbwA 607 4.89e+00 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1c0pA 363 5.33e+00 1an9A c.4.1.2,d.16.1.3 30647,37934 1wu7A 434 5.95e+00 1ofdA 1520 6.15e+00 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1fj2A 232 6.45e+00 1auoA c.69.1.14 34720 1ys4A 354 6.51e+00 1omzA 293 6.55e+00 c.68.1.15 87093 1tz0A 114 7.78e+00 d.58.4.5 107463 1e2kA 331 9.05e+00 1qhiA c.37.1.1 31854 1esmA 316 9.59e+00 1esmA c.37.1.6 31953 1zq1C 633 1.06e+01 1nriA 306 1.08e+01 c.80.1.3 86123 1n7vA 555 1.14e+01 b.126.1.1 85377 2cxnA 557 1.14e+01 1jpzA 473 1.22e+01 a.104.1.1 67069 1wloA 136 1.24e+01 1qhiA 366 1.35e+01 1qhiA c.37.1.1 31860 1vj7A 393 1.35e+01 a.211.1.1,d.218.1.8 100801,100802 1moq 368 1.42e+01 1moq c.80.1.1 35302 1l1sA 113 1.43e+01 c.114.1.1 73484 1lqtA 456 1.43e+01 c.3.1.1,c.4.1.1 74198,74199 1o08A 221 1.49e+01 c.108.1.6 86525 1wosA 364 1.50e+01 b.44.2.1,d.250.1.1 109468,109469 1xrjA 261 1.50e+01 1fm0E 150 1.52e+01 1fmaE d.41.5.1 38629 1g99A 408 1.55e+01 1g99A c.55.1.2,c.55.1.2 33457,33458 2cg4A 152 1.57e+01 1vimA 200 1.61e+01 c.80.1.3 100758 1uf2A 1019 1.74e+01 e.28.1.2 99289 1zhxA 438 1.76e+01 1wruA 379 1.83e+01 2fnjB 118 1.87e+01 1czaN 917 1.90e+01 1qhaA c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1q0pA 223 1.90e+01 c.62.1.1 95507 1bu7A 455 1.91e+01 1bu7A a.104.1.1 18937 1z6kA 293 1.95e+01 1nnhA 294 1.96e+01 d.104.1.1 92005 2d0oA 610 2.02e+01 2aalA 131 2.06e+01 1vcbA 118 2.07e+01 1vcbA d.15.1.1 37603 1y5iA 1246 2.07e+01 1tx4B 178 2.10e+01 1ctqA c.37.1.8 32045 1lm8B 118 2.11e+01 d.15.1.1 74033 1chmA 401 2.15e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 1vdwA 254 2.25e+01 e.7.1.1 100569 1p9aG 290 2.27e+01 c.10.2.7 87990 1jj2H 167 2.34e+01 1ffkF d.41.4.1 63093 1jyhA 157 2.35e+01 d.60.1.3 71956 1kaeA 434 2.36e+01 c.82.1.2 72247 1q2lA 939 2.39e+01 1d8cA 723 2.41e+01 1d8cA c.1.13.1 29325 1aqcA 172 2.42e+01 1x11A b.55.1.2 26983 1j5uA 136 2.42e+01 d.208.1.1 71584 2bklA 695 2.46e+01 1kmqA 184 2.48e+01 c.37.1.8 84412 1iatA 557 2.53e+01 1dqrA c.80.1.2 62123 1vddA 228 2.57e+01 e.49.1.1 108519 1y8aA 332 2.58e+01 1efdN 266 2.62e+01 1efdN c.92.2.1 35597 1o7qA 289 2.64e+01 c.68.1.9 92626 1zcjA 463 2.67e+01 1gx4A 289 2.68e+01 c.68.1.9 83362 1nnwA 252 2.69e+01 d.159.1.5 80674 1j27A 102 2.72e+01 d.58.50.1 90778 2gn4A 344 2.77e+01 1wvqA 167 2.81e+01 1cnzA 363 2.83e+01 1cnzA c.77.1.1 35061 2bgiA 272 2.84e+01 1vggA 161 2.94e+01 1q9jA 422 2.99e+01 c.43.1.2,c.43.1.2 104590,104591 1uxtA 501 3.01e+01 c.82.1.1 108125 1ni4B 341 3.02e+01 c.36.1.7,c.48.1.2 85729,85730 1fa0A 537 3.03e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 1dtwB 342 3.05e+01 1qs0B c.36.1.7,c.48.1.2 31828,33102 1uj2A 252 3.08e+01 c.37.1.6 99452 1ow1A 195 3.08e+01 b.131.1.3 93625 1koqA 253 3.14e+01 2cba b.74.1.1 27964 1f45B 197 3.15e+01 1f45B a.26.1.1 59642 1q16A 1247 3.23e+01 b.52.2.2,c.81.1.1 95546,95547 1pl8A 356 3.25e+01 b.35.1.2,c.2.1.1 94878,94879 1rwtA 232 3.26e+01 f.43.1.1 97992 1izoA 417 3.28e+01 a.104.1.1 83851 1ss9A 311 3.30e+01 c.68.1.4 105978 2govA 195 3.42e+01 1ftrA 296 3.61e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 1a8y 367 3.74e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1ga8A 311 3.75e+01 1ga8A c.68.1.4 34516 1souA 194 3.81e+01 c.124.1.6 105858 2gfhA 260 3.93e+01 2ckiA 262 3.94e+01 2b25A 336 4.00e+01 1aoeA 192 4.04e+01 1aoeA c.71.1.1 34923 1wxxA 382 4.06e+01 1vjjA 692 4.14e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 1rq2A 382 4.14e+01 c.32.1.1,d.79.2.1 105048,105049 8dfr 189 4.18e+01 1aoeA c.71.1.1 34895 1u2pA 163 4.23e+01 1vkwA 218 4.29e+01 d.90.1.2 108695 1nxiA 132 4.32e+01 d.58.47.1 86381 1nd7A 374 4.35e+01 d.148.1.1 91817 1m0wA 491 4.38e+01 c.30.1.4,d.142.1.6 78363,78364 1ve1A 304 4.39e+01 1yfsA 465 4.41e+01 1hy7A 173 4.49e+01 d.92.1.11 65957 1x7yB 342 4.52e+01 1x7dA 350 4.55e+01 1udvA 89 4.55e+01 d.68.6.1 99224 1z08A 170 4.60e+01 1e8yA 966 4.61e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1v5vA 401 4.63e+01 1lylA 504 4.66e+01 1lylA b.40.4.1,d.104.1.1 25261,40717 1v1rB 342 4.71e+01 c.36.1.7,c.48.1.2 108273,108274 1zejA 293 4.74e+01 1hc7A 477 4.76e+01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 2fflA 756 4.77e+01 1z3eA 132 4.80e+01 1f60A 458 4.82e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1w1oA 534 4.84e+01 d.58.32.4,d.145.1.1 109071,109072 1xrhA 351 4.86e+01 1kv7A 488 4.98e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 2jdxA 385 5.02e+01 1jdw d.126.1.2 41139 1xygD 359 5.03e+01 1mp9A 198 5.10e+01 d.129.1.1,d.129.1.1 91385,91386 1xkrA 206 5.12e+01 1nt4A 391 5.23e+01 c.60.1.2 92102 1c4oA 664 5.26e+01 1d2mA c.37.1.19,c.37.1.19 32415,32416 1nf3A 195 5.29e+01 c.37.1.8 85594 1px5A 349 5.30e+01 a.160.1.2,d.218.1.6 95277,95278 2bhwA 232 5.36e+01 1yb2A 275 5.38e+01 2b20A 403 5.45e+01 1kinA 366 5.49e+01 1azo 232 5.49e+01 1azo c.52.1.14 33329 1yghA 164 5.51e+01 1yghA d.108.1.1 40802 2b34A 199 5.69e+01 1fts 295 5.76e+01 1ng1 a.24.13.1,c.37.1.10 16968,32279 2gnpA 266 5.79e+01 1wi1A 126 5.82e+01 1iuhA 198 5.90e+01 d.61.1.2 83711 1p7tA 731 5.94e+01 c.1.13.1 94319 1wpoA 256 6.01e+01 1lay b.57.1.1 27012 1i4wA 353 6.02e+01 c.66.1.24 66028 1cs8A 316 6.06e+01 1cs8A d.3.1.1 37065 1xkpC 143 6.07e+01 1m3sA 186 6.18e+01 c.80.1.3 78573 1iv8A 720 6.28e+01 b.71.1.1,c.1.8.1 76842,76843 1j7nA 776 6.30e+01 d.92.1.14,d.92.1.14,d.166.1.1 66409,66410,66411 1e9lA 377 6.40e+01 1e9lA c.1.8.5,d.26.3.1 59395,59396 1rm8A 169 6.41e+01 d.92.1.11 97660 1ntyA 311 6.52e+01 a.87.1.1,b.55.1.1 103873,103874 1ev7A 317 6.55e+01 1ev7B c.52.1.9 33315 1tag 324 6.59e+01 1cipA a.66.1.1,c.37.1.8 18197,32080 1fo8A 343 6.62e+01 1foaA c.68.1.10 59927 1u67A 600 6.64e+01 a.93.1.2,g.3.11.1 107697,107698 1ru3A 732 6.75e+01 e.26.1.3 97835 2bcoA 350 6.80e+01 1e1oA 504 6.90e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 1vqwA 457 6.94e+01 1hr6B 443 7.07e+01 1be3A d.185.1.1,d.185.1.1 61166,61167 1gklA 297 7.14e+01 c.69.1.2 65250 1mqsA 671 7.17e+01 e.25.1.1 79414 1lyxA 248 7.23e+01 c.1.1.1 78304 1olsB 342 7.30e+01 c.36.1.7,c.48.1.2 93332,93333 2dri 271 7.31e+01 2dri c.93.1.1 35637 1g0hA 252 7.31e+01 1dk4A e.7.1.1 60171 1tc1A 220 7.31e+01 1tc1A c.61.1.1 34083 1kb9B 352 7.32e+01 d.185.1.1,d.185.1.1 77313,77314 2cwlA 302 7.34e+01 1ezvB 352 7.40e+01 1ezvB d.185.1.1,d.185.1.1 59543,59544 1tk9A 188 7.41e+01 c.80.1.3 107082 1oacA 727 7.45e+01 1oacA b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1uc2A 481 7.59e+01 d.261.1.1 99161 1it2A 146 7.71e+01 a.1.1.2 66365 2ga9D 469 7.75e+01 1gg1A 350 7.77e+01 1qr7A c.1.10.4 29187 1d2mA 665 7.80e+01 1d2mA c.37.1.19,c.37.1.19 32417,32418 1vrmA 325 7.81e+01 1mo1A 87 7.83e+01 d.94.1.1 91363 1kmvA 186 7.88e+01 c.71.1.1 72757 1qqgA 264 7.88e+01 1qqgA b.55.1.2,b.55.1.2 26987,26988 1ohtA 215 7.93e+01 d.118.1.1 87036 1jeoA 180 8.09e+01 c.80.1.3 66611 2bfdB 345 8.16e+01 1x42A 232 8.16e+01 1ro5A 201 8.19e+01 d.108.1.3 105023 1tr0A 108 8.26e+01 d.58.4.4 107261 2ftrA 108 8.29e+01 1dysA 348 8.32e+01 1bvwA c.6.1.1 30669 1cl1A 395 8.34e+01 1cl2A c.67.1.3 34395 1kwgA 645 8.36e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1o5xA 248 8.42e+01 c.1.1.1 92528 1phk 298 8.51e+01 1cdkA d.144.1.7 41635 1w5fA 353 8.52e+01 1wbpA 397 8.54e+01 1vi2A 300 8.55e+01 c.2.1.7,c.58.1.5 100726,100727 1h1dA 221 8.61e+01 c.66.1.1 83452 1xv5A 401 8.62e+01 1j5yA 187 8.63e+01 a.4.5.1,d.94.2.1 71592,71593 1hfs 160 8.67e+01 1hfc d.92.1.11 40370 1nw3A 416 8.68e+01 c.66.1.31 86288 1jj2B 337 8.72e+01 1ffkB b.43.3.2 63086 1s72B 338 8.73e+01 b.43.3.2 105320 1w9yA 319 8.90e+01 1zh5A 195 8.92e+01 1sqiA 393 8.93e+01 d.32.1.3,d.32.1.3 105914,105915 1t5oA 351 8.93e+01 c.124.1.5 106459 1e8cA 498 8.95e+01 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1n8fA 350 8.97e+01 c.1.10.4 85397