# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gvkA 317 5.74e-35 1r8gA 372 9.79e-01 d.128.1.3 104845 1p7tA 731 3.81e+00 c.1.13.1 94319 2g0dA 409 4.05e+00 1aoeA 192 9.77e+00 1aoeA c.71.1.1 34923 1d8cA 723 1.04e+01 1d8cA c.1.13.1 29325 1e79G 272 1.28e+01 1e79G c.49.2.1 33158 1yovA 537 1.28e+01 1u04A 771 1.41e+01 b.34.14.1,c.55.3.10 107539,107540 1gg1A 350 1.74e+01 1qr7A c.1.10.4 29187 1uc2A 481 1.80e+01 d.261.1.1 99161 1t5oA 351 1.89e+01 c.124.1.5 106459 2gmyA 153 2.15e+01 1ewkA 490 2.21e+01 1ewkA c.93.1.1 35712 1s1fA 406 2.25e+01 1vlpA 441 2.36e+01 d.41.2.2,d.41.2.3 108840,108841 1n8fA 350 2.41e+01 c.1.10.4 85397 1cjxA 357 2.44e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1zt2B 212 2.46e+01 1gydB 315 2.50e+01 b.67.2.1 70751 1uedA 406 2.94e+01 a.104.1.1 99256 1m4zA 238 3.09e+01 b.34.12.1 78630 2c7hA 86 3.15e+01 1azsA 220 3.29e+01 1azsA d.58.29.1 39416 1i1rB 181 3.29e+01 1i1rB a.26.1.1 61548 1lgpA 116 3.35e+01 b.26.1.2 73890 1v64A 108 3.36e+01 a.21.1.1 108392 1gyhA 318 3.48e+01 b.67.2.1 70757 1fmjA 351 3.53e+01 c.37.1.5 59879 1budA 197 3.65e+01 1atlA d.92.1.9 40328 1r9jA 673 4.00e+01 1ql3A 99 4.27e+01 1ycc a.3.1.1 15822 1khvA 516 4.28e+01 e.8.1.4 68627 1vgoA 253 4.56e+01 2gdnA 267 4.72e+01 1aa8A 347 4.77e+01 1an9A 2bjqA 345 4.78e+01 2gnoA 305 4.97e+01 1ks8A 433 5.05e+01 a.102.1.2 77519 2d1eA 248 5.34e+01 1f06A 320 5.35e+01 1dapA c.2.1.3,d.81.1.3 59556,59557 1tm0A 350 5.35e+01 d.21.1.3 107147 1t0tV 248 5.36e+01 d.58.4.10 106229 1owfB 94 5.40e+01 a.55.1.1 87488 1ve9A 347 5.64e+01 c.4.1.2,d.16.1.3 100571,100572 1v4pA 157 5.64e+01 1kqfB 294 5.65e+01 d.58.1.5,f.23.22.1 75900,75901 2d4qA 257 5.85e+01 1v7oA 165 5.97e+01 d.67.1.2 100480 1wnhA 225 6.05e+01 2d09A 407 6.10e+01 1an9A 340 6.20e+01 1an9A c.4.1.2,d.16.1.3 30617,37904 1utyA 187 6.59e+01 b.147.1.1 108036 1gggA 226 6.61e+01 1lst c.94.1.1 35817 2bkkA 264 6.68e+01 1ukvY 206 6.77e+01 c.37.1.8 107918 2aexA 346 6.90e+01 1jkeA 145 6.90e+01 c.110.1.1 66791 1vlwA 217 6.93e+01 c.1.10.1 108868 1wa3A 205 7.12e+01 1v9dA 340 7.13e+01 a.207.1.1 100535 1z0jA 170 7.18e+01 1chd 203 7.27e+01 1chd c.40.1.1 32478 2bcgY 206 7.40e+01 2cb2A 318 7.52e+01 1fo8A 343 7.53e+01 1foaA c.68.1.10 59927 2bryA 497 7.55e+01 2b81A 323 7.60e+01 1tl9A 339 7.82e+01 1z6kA 293 7.90e+01 1ftrA 296 7.95e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 1f0cA 305 8.07e+01 1c8oA e.1.1.1 42676 1t0aA 159 8.30e+01 2gefA 217 8.38e+01 1zavA 180 8.38e+01 2ga9D 469 8.58e+01 1gp1A 198 8.59e+01 1gp1A c.47.1.10 33059 1f0jA 377 8.86e+01 1f0jA a.211.1.2 19346 1q7sA 117 8.90e+01 c.131.1.1 96055 1lucA 355 8.98e+01 1lucA c.1.16.1 29547